IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4007	 50.44	0	4590752..4591090	-	112	74314625	cutA	SSON_4320	-	divalent-cation tolerance protein CutA
4008	 52.38	0	4591206..4592507	-	433	74314626	dcuA	SSON_4321	-	anaerobic C4-dicarboxylate transporter
4009	 48.92	0	4592625..4594106	-	493	74314627	aspA	SSON_4322	-	aspartate ammonia-lyase
4010	 47.77	0	4594398..4594868	+	156	74314628	fxsA	SSON_4323	-	FxsA
4011	 51.87	0	4594890..4596146	-	418	74314629	yjeH	SSON_4324	-	inner membrane protein YjeH
4012	 48.64	0	4596422..4596715	+	97	74314630	groES	SSON_4325	-	co-chaperonin GroES
4013	 53.31	0	4596759..4598405	+	548	74314631	groEL	SSON_4326	-	chaperonin GroEL
4014	 55.30	0	4598510..4598896	+	128	74314632	yjeI	SSON_4327	-	hypothetical protein
4015	 45.96	-1	4599099..4599866	-	255	74314633	yjeJ	SSON_4328	-	hypothetical protein
4016	 54.56	0	4600133..4600636	+	167	74314634	-	SSON_4329	-	IS1 ORF
4017	 53.16	0	4601135..4602163	-	342	74314635	yjeK	SSON_4330	-	hypothetical protein
4018	 49.91	0	4602205..4602771	+	188	74314636	efp	SSON_4331	-	elongation factor P
4019	 54.76	0	4602823..4602948	+	41	74314637	-	SSON_4332	-	entericidin A
4020	 47.62	0	4603059..4603205	+	48	74314638	-	SSON_4333	-	entericidin B membrane lipoprotein
4021	 53.37	0	4603694..4604227	-	177	74314639	blc	SSON_4335	-	outer membrane lipoprotein Blc
4022	 50.53	0	4604316..4605449	-	377