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Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 4003 51.96 0 4582628..4583341 + 237 74314621 - SSON_4313 - IS600 ORF2 4004 53.90 0 4583428..4584774 + 448 74314622 - SSON_4314 - IS4 orf 4005 53.50 0 4588467..4589066 - 199 74314623 yjdC SSON_4318 - putative transcriptional regulator 4006 53.77 0 4589079..4590776 - 565 74314624 dipZ SSON_4319 - thiol:disulfide interchange protein precursor 4007 50.44 0 4590752..4591090 - 112 74314625 cutA SSON_4320 - divalent-cation tolerance protein CutA 4008 52.38 0 4591206..4592507 - 433 74314626 dcuA SSON_4321 - anaerobic C4-dicarboxylate transporter 4009 48.92 0 4592625..4594106 - 493 74314627 aspA SSON_4322 - aspartate ammonia-lyase 4010 47.77 0 4594398..4594868 + 156 74314628 fxsA SSON_4323 - FxsA 4011 51.87 0 4594890..4596146 - 418 74314629 yjeH SSON_4324 - inner membrane protein YjeH 4012 48.64 0 4596422..4596715 + 97 74314630 groES SSON_4325 - co-chaperonin GroES 4013 53.31 0 4596759..4598405 + 548 74314631 groEL SSON_4326 - chaperonin GroEL 4014 55.30 0 4598510..4598896 + 128 74314632 yjeI SSON_4327 - hypothetical protein 4015 45.96 -1 4599099..4599866 - 255 74314633 yjeJ SSON_4328 - hypothetical protein 4016 54.56 0 4600133..4600636 + 167 74314634 - SSON_4329 - IS1 ORF 4017 53.16 0 4601135..4602163 - 342 74314635 yjeK SSON_4330 - hypothetical protein 4018 49.91 0 4602205..4602771 + 188 74314636 efp SSON_4331 - elongation factor P 4019 54.76 0 4602823..4602948 + 41 74314637 - SSON_4332 - entericidin A 4020 47.62 0 4603059..4603205 + 48 74314638 - SSON_4333 - entericidin B membrane lipoprotein 4021 53.37 0 4603694..4604227 - 177 74314639 blc SSON_4335 - outer membrane lipoprotein Blc 4022 50.53 0 4604316..4605449 - 377 74314640 ampC SSON_4336 - beta-lactamase 4023 53.89 0 4605512..4605871 - 119 74314641 frdD SSON_4337 - fumarate reductase subunit D 4024 49.24 0 4605882..4606277 - 131 74314642 frdC SSON_4338 - fumarate reductase subunit C 4025 53.20 0 4606288..4607022 - 244 74314643 frdB SSON_4339 - fumarate reductase iron-sulfur subunit 4026 56.27 +1 4607015..4608823 - 602 74314644 frdA SSON_4340 - fumarate reductase flavoprotein subunit 4027 52.25 0 4609148..4610125 + 325 161986385 yjeA SSON_4341 - lysyl-tRNA synthetase 4028 54.37 0 4610760..4611263 + 167 74314646 - SSON_4342 - IS1 ORF 4029 55.39 0 4612774..4616097 - 1107 74314647 yjeP SSON_4344 - hypothetical protein 4030 53.25 0 4616119..4617087 - 322 74314648 psd SSON_4345 - phosphatidylserine decarboxylase 4031 53.85 0 4617184..4618236 - 350 161986384 yjeQ SSON_4346 - ribosome-associated GTPase 4032 53.66 0 4618331..4618876 + 181 161986383 yjeR SSON_4347 - oligoribonuclease 4033 52.63 0 4619776..4620915 - 379 74314652 yjeS SSON_4352 - hypothetical protein 4034 57.36 +1 4620914..4622461 + 515 74314651 yjeF SSON_4351 - hypothetical protein 4035 51.52 0 4622433..4622894 + 153 74314653 yjeE SSON_4353 - putative ATPase 4036 55.38 0 4622913..4624250 + 445 74314654 amiB SSON_4354 - N-acetylmuramoyl-l-alanine amidase II 4037 56.33 +1 4624260..4626107 + 615 74314655 mutL SSON_4355 - DNA mismatch repair protein 4038 53.52 0 4626100..4627050 + 316 74314656 miaA SSON_4356 - tRNA delta(2)-isopentenylpyrophosphate transferase 4039 48.87 0 4627136..4627444 + 102 74314657 hfq SSON_4357 - RNA-binding protein Hfq 4040 53.63 0 4627521..4628801 + 426 74314658 hflX SSON_4358 - putative GTPase HflX 4041 56.19 +1 4628887..4630146 + 419 74314659 hflK SSON_4359 - FtsH protease regulator HflK 4042 53.03 0 4630149..4631153 + 334 74314660 hflC SSON_4360 - FtsH protease regulator HflC 4043 48.99 0 4631235..4631432 + 65 74314661 yjeT SSON_4361 - hypothetical protein 4044 53.81 0 4631536..4632834 + 432 74314662 purA SSON_4362 - adenylosuccinate synthetase 4045 48.83 0 4633039..4633464 + 141 74314663 yjeB SSON_4363 - transcriptional repressor NsrR 4046 55.20 0 4633503..4635944 + 813 161986382 vacB SSON_4364 - exoribonuclease R 4047 55.74 0 4636124..4636855 + 243 74314665 yjfH SSON_4365 - 23S rRNA (guanosine-2'-O-)-methyltransferase 4048 54.37 0 4637175..4637678 + 167 74314666 - SSON_4366 - IS1 ORF 4049 52.84 0 4638277..4639440 + 387 74314667 yjfC SSON_4368 - putative synthetase/amidase 4050 54.24 0 4639509..4641149 + 546 74314668 aidB SSON_4369 - isovaleryl CoA dehydrogenase 4051 51.16 0 4641266..4641568 - 100 74314669 yjfN SSON_4370 - hypothetical protein 4052 48.79 0 4641690..4642019 - 109 161986381 yjfO SSON_4371 - hypothetical protein 4053 53.47 0 4642201..4642950 + 249 74314671 yjfP SSON_4372 - esterase 4054 50.66 0 4642947..4643702 - 251 74314672 yjfQ SSON_4373 - transcriptional repressor UlaR 4055 51.73 0 4643810..4644880 - 356 74314673 yjfR SSON_4374 - putative L-ascorbate 6-phosphate lactonase 4056 51.31 0 4646643..4646948 + 101 74314674 sgaB SSON_4376 - L-ascorbate-specific enzyme IIB component of PTS 4057 55.48 0 4646958..4647422 + 154 74314675 ptxA SSON_4377 - L-ascorbate-specific enzyme IIA component of PTS 4058 56.07 +1 4647436..4648086 + 216 74314676 ulaD SSON_4378 - 3-keto-L-gulonate-6-phosphate decarboxylase 4059 57.89 +1 4648096..4648950 + 284 74314677 sgaU SSON_4379 - L-xylulose 5-phosphate 3-epimerase 4060 56.91 +1 4648950..4649636 + 228 74314678 sgaE SSON_4380 - L-ribulose-5-phosphate 4-epimerase 4061 46.74 -1 4649733..4650284 + 183 74314679 yagU SSON_4381 - hypothetical protein 4062 46.95 -1 4650396..4650674 - 92 74314680 yjfY SSON_4382 - hypothetical protein 4063 52.78 0 4651001..4651396 + 131 74314681 rpsF SSON_4383 - 30S ribosomal protein S6 4064 52.06 0 4651403..4651717 + 104 74314682 priB SSON_4384 - primosomal replication protein N 4065 52.63 0 4651722..4651949 + 75 74314683 rpsR SSON_4385 - 30S ribosomal protein S18 4066 50.00 0 4651991..4652440 + 149 74314684 rplI SSON_4386 - 50S ribosomal protein L9 4067 44.55 -1 4652552..4653523 - 323 74314685 - SSON_4387 - putative dicarboxylate-binding periplasmic protein 4068 54.17 0 4654009..4654512 - 167 74314686 - SSON_4389 - IS1 ORF 4069 42.20 -2 4654786..4655112 + 108 74314687 ytfA SSON_4390 - hypothetical protein 4070 55.11 0 4655096..4655770 - 224 74314688 ytfB SSON_4391 - hypothetical protein 4071 52.51 0 4656882..4658294 + 470 74314689 cycA SSON_4393 - D-alanine/D-serine/glycine permease 4072 52.64 0 4658339..4659001 - 220 74314690 ytfE SSON_4394 - cell morphogenesis/cell wall metabolism regulator 4073 55.38 0 4659109..4660083 - 324 74314691 ytfF SSON_4395 - putative transmembrane subunit 4074 53.89 0 4660182..4661042 - 286 74314693 ytfG SSON_4397 - putative oxidoreductase 4075 52.02 0 4661041..4661511 + 156 74314692 ytfH SSON_4396 - hypothetical protein 4076 49.43 0 4661629..4663572 - 647 74314694 cpdB SSON_4398 - bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 4077 55.06 0 4663762..4664502 + 246 74314695 cysQ SSON_4399 - PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase 4078 35.86 -2 4664714..4665625 + 303 74314696 ytfI SSON_4400 - hypothetical protein 4079 52.25 0 4665715..4666269 - 184 74314697 ytfJ SSON_4401 - hypothetical protein 4080 44.72 -1 4666555..4666800 + 81 74314698 ytfK SSON_4402 - hypothetical protein 4081 50.82 0 4666880..4668223 - 447 74314699 ytfL SSON_4403 - putative transport protein 4082 54.30 0 4668546..4669184 - 212 74314700 msrA SSON_4404 - methionine sulfoxide reductase A 4083 53.06 0 4669390..4671123 + 577 74314701 ytfM SSON_4405 - hypothetical protein 4084 55.19 0 4671120..4674899 + 1259 74314702 ytfN SSON_4406 - hypothetical protein 4085 51.46 0 4674902..4675243 + 113 74314703 ytfP SSON_4407 - hypothetical protein 4086 51.22 0 4675622..4676152 - 176 74314704 ppa SSON_4408 - inorganic pyrophosphatase 4087 50.16 0 4676462..4677418 + 318 74314705 ytfQ SSON_4409 - putative LACI-type transcriptional regulator 4088 55.49 0 4677558..4679060 + 500 74314706 ytfR SSON_4410 - putative ATP-binding component of a transport system 4089 57.31 +1 4679071..4680096 + 341 74314707 ytfT SSON_4411 - putative transport system permease protein 4090 53.09 0 4680107..4681078 + 323 74314708 yjfF SSON_4412 - inner membrane ABC transporter permease protein YjfF 4091 51.35 0 4681111..4682109 - 332 74314709 fbp SSON_4413 - fructose-1,6-bisphosphatase 4092 55.31 0 4682285..4683658 + 457 74314710 yjfG SSON_4414 - putative ligase 4093 52.90 0 4683741..4684292 - 183 74314711 yjgA SSON_4415 - hypothetical protein 4094 53.88 0 4684386..4685738 + 450 74314712 pmbA SSON_4416 - peptidase PmbA 4095 51.16 0 4686006..4686308 + 100 74314713 cybC SSON_4417 - cytochrome b562 4096 50.54 0 4686353..4686817 - 154 74314714 nrdG SSON_4418 - anaerobic ribonucleotide reductase-activating protein 4097 53.86 0 4686975..4689113 - 712 74314715 nrdD SSON_4419 - anaerobic ribonucleoside triphosphate reductase 4098 53.14 0 4689507..4691162 - 551 74314716 treC SSON_4420 - trehalose-6-phosphate hydrolase 4099 54.71 0 4691212..4692633 - 473 74314717 treB SSON_4421 - trehalose(maltose)-specific PTS system components IIBC 4100 53.80 0 4692752..4693699 - 315 74314718 treR SSON_4422 - trehalose repressor 4101 52.65 0 4694078..4696774 + 898 74314719 mgtA SSON_4423 - magnesium-transporting ATPase MgtA 4102 51.41 0 4696980..4697405 - 141 74314720 yjgF SSON_4424 - hypothetical protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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