IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3992	 49.17	0	4569741..4570460	-	239	74314610	yjdG	SSON_4301	-	DNA-binding transcriptional activator DcuR
3993	 50.18	0	4570457..4572088	-	543	74314611	yjdH	SSON_4302	-	sensory histidine kinase DcuS
3994	 48.48	0	4572269..4572499	+	76	74314612	yjdI	SSON_4303	-	hypothetical protein
3995	 41.76	-2	4572511..4572783	+	90	74314613	yjdJ	SSON_4304	-	hypothetical protein
3996	 34.34	-2	4573010..4573306	+	98	74314614	yjdK	SSON_4305	-	hypothetical protein
3997	 47.36	-1	4573626..4575143	-	505	74314615	lysU	SSON_4306	-	lysyl-tRNA synthetase
3998	 51.23	0	4575380..4576837	-	485	74314616	yjdL	SSON_4307	-	putative peptide transporter
3999	 52.10	0	4577199..4577912	-	237	74314617	-	SSON_4309	-	IS600 ORF2
4000	 46.53	-1	4578053..4578355	-	100	74314618	-	SSON_4310	-	IS600 ORF1
4001	 55.08	0	4579314..4580219	-	301	161986386	-	SSON_4311	-	insertion element IS2 transposase InsD
4002	 46.20	-1	4582185..4582487	+	100	74314620	-	SSON_4312	-	IS600 ORF1
4003	 51.96	0	4582628..4583341	+	237	74314621	-	SSON_4313	-	IS600 ORF2
4004	 53.90	0	4583428..4584774	+	448	74314622	-	SSON_4314	-	IS4 orf
4005	 53.50	0	4588467..4589066	-	199	74314623	yjdC	SSON_4318	-	putative transcriptional regulator
4006	 53.77	0	4589079..4590776	-	565	74314624	dipZ	SSON_4319	-	thiol:disulfide interchange protein precursor
4007	 50.44	0	4590752..4591090	-	112