IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3972	 61.15	+2	4541243..4542022	-	259	74314590	phnE	SSON_4279	-	membrane channel protein component of Pn transporter
3973	 54.57	0	4542148..4543164	-	338	74314591	phnD	SSON_4280	-	periplasmic binding protein component of Pn transporter
3974	 58.81	+1	4543189..4543977	-	262	74314592	phnC	SSON_4281	-	phosphonate/organophosphate ester transporter subunit
3975	 46.13	-1	4544711..4545046	-	111	74314593	phnA	SSON_4283	-	hypothetical protein
3976	 51.46	0	4545459..4547687	+	742	74314594	yjdA	SSON_4284	-	hypothetical protein
3977	 56.35	+1	4547717..4548550	+	277	74314595	yjcZ	SSON_4285	-	hypothetical protein
3978	 50.23	0	4548814..4550316	+	500	74314596	proP	SSON_4286	-	proline/glycine betaine transporter
3979	 54.30	0	4550493..4551584	-	363	74314597	basS	SSON_4287	-	sensor protein BasS/PmrB
3980	 53.06	0	4551594..4552262	-	222	74314598	basR	SSON_4288	-	DNA-binding transcriptional regulator BasR
3981	 49.76	0	4552259..4553932	-	557	74314599	yjdB	SSON_4289	-	putative cell division protein
3982	 54.19	0	4554006..4555343	-	445	74314600	yjdE	SSON_4290	-	arginine:agmatin antiporter
3983	 41.34	-2	4555480..4556241	-	253	74314601	adiY	SSON_4291	-	putative ARAC-type regulatory protein
3984	 52.62	0	4556566..4558836	-	756	74314602	adiA	SSON_4292	-	biodegradative arginine decarboxylase
3985	 50.06	0	4559032..4559940	-	302	74314603	melR	SSON_4293	-	DNA-binding transcriptional regulator MelR
3986	 51.99	0	4560223..4561578	+	451	74314604	melA	S