version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3963 60.93 +2 4534325..4534882 - 185 74314581 phnN SSON_4270 - ribose 1,5-bisphosphokinase 3964 61.13 +2 4534882..4536018 - 378 74314582 phnM SSON_4271 - phosphonate metabolism 3965 61.23 +2 4536015..4536695 - 226 74314583 phnL SSON_4272 - ATP-binding component of phosphonate transport 3966 61.26 +2 4536806..4537564 - 252 74314584 phnK SSON_4273 - phosphonates transport ATP-binding protein 3967 57.92 +1 4537561..4538406 - 281 74314585 phnJ SSON_4274 - phosphonate metabolism 3968 61.41 +2 4538399..4539463 - 354 74314586 phnI SSON_4275 - phosphonate metabolism 3969 61.88 +2 4539463..4540047 - 194 74314587 phnH SSON_4276 - carbon-phosphorus lyase complex subunit 3970 61.81 +2 4540044..4540496 - 150 74314588 phnG SSON_4277 - phosphonate metabolism 3971 61.29 +2 4540497..4541222 - 241 74314589 phnF SSON_4278 - putative transcriptional regulator 3972 61.15 +2 4541243..4542022 - 259 74314590 phnE SSON_4279 - membrane channel protein component of Pn transporter 3973 54.57 0 4542148..4543164 - 338 74314591 phnD SSON_4280 - periplasmic binding protein component of Pn transporter 3974 58.81 +1 4543189..4543977 - 262 74314592 phnC SSON_4281 - phosphonate/organophosphate ester transporter subunit 3975 46.13 -1 4544711..4545046 - 111 74314593 phnA SSON_4283 - hypothetical protein 3976 51.46 0 4545459..4547687 + 742 74314594 yjdA SSON_4284 - hypothetical protein 3977 56.35 +1 4547717..4548550 + 277 74314595 yjcZ SSON_4285 - hypothetical protein 3978 50.23 0 4548814..4550316 + 500 74314596 proP SSON_4286 - proline/glycine betaine transporter 3979 54.30 0 4550493..4551584 - 363 74314597 basS SSON_4287 - sensor protein BasS/PmrB 3980 53.06 0 4551594..4552262 - 222 74314598 basR SSON_4288 - DNA-binding transcriptional regulator BasR 3981 49.76 0 4552259..4553932 - 557 74314599 yjdB SSON_4289 - putative cell division protein 3982 54.19 0 4554006..4555343 - 445 74314600 yjdE SSON_4290 - arginine:agmatin antiporter 3983 41.34 -2 4555480..4556241 - 253 74314601 adiY SSON_4291 - putative ARAC-type regulatory protein 3984 52.62 0 4556566..4558836 - 756 74314602 adiA SSON_4292 - biodegradative arginine decarboxylase 3985 50.06 0 4559032..4559940 - 302 74314603 melR SSON_4293 - DNA-binding transcriptional regulator MelR 3986 51.99 0 4560223..4561578 + 451 74314604 melA SSON_4294 - alpha-galactosidase 3987 55.19 0 4562949..4563854 + 301 161986387 - SSON_4296 - insertion element IS2 transposase InsD 3988 54.37 0 4564850..4565353 + 167 74314606 - SSON_4297 - IS1 ORF 3989 53.88 0 4565288..4565983 - 231 74314607 yjdF SSON_4298 - hypothetical protein 3990 54.16 0 4566106..4567752 - 548 74314608 fumB SSON_4299 - fumarase B 3991 52.50 0 4567830..4569170 - 446 74314609 dcuB SSON_4300 - anaerobic C4-dicarboxylate transporter 3992 49.17 0 4569741..4570460 - 239 74314610 yjdG SSON_4301 - DNA-binding transcriptional activator DcuR 3993 50.18 0 4570457..4572088 - 543 74314611 yjdH SSON_4302 - sensory histidine kinase DcuS 3994 48.48 0 4572269..4572499 + 76 74314612 yjdI SSON_4303 - hypothetical protein 3995 41.76 -2 4572511..4572783 + 90 74314613 yjdJ SSON_4304 - hypothetical protein 3996 34.34 -2 4573010..4573306 + 98 74314614 yjdK SSON_4305 - hypothetical protein 3997 47.36 -1 4573626..4575143 - 505 74314615 lysU SSON_4306 - lysyl-tRNA synthetase 3998 51.23 0 4575380..4576837 - 485 74314616 yjdL SSON_4307 - putative peptide transporter 3999 52.10 0 4577199..4577912 - 237 74314617 - SSON_4309 - IS600 ORF2 4000 46.53 -1 4578053..4578355 - 100 74314618 - SSON_4310 - IS600 ORF1 4001 55.08 0 4579314..4580219 - 301 161986386 - SSON_4311 - insertion element IS2 transposase InsD 4002 46.20 -1 4582185..4582487 + 100 74314620 - SSON_4312 - IS600 ORF1 4003 51.96 0 4582628..4583341 + 237 74314621 - SSON_4313 - IS600 ORF2 4004 53.90 0 4583428..4584774 + 448 74314622 - SSON_4314 - IS4 orf 4005 53.50 0 4588467..4589066 - 199 74314623 yjdC SSON_4318 - putative transcriptional regulator 4006 53.77 0 4589079..4590776 - 565 74314624 dipZ SSON_4319 - thiol:disulfide interchange protein precursor 4007 50.44 0 4590752..4591090 - 112 74314625 cutA SSON_4320 - divalent-cation tolerance protein CutA 4008 52.38 0 4591206..4592507 - 433 74314626 dcuA SSON_4321 - anaerobic C4-dicarboxylate transporter 4009 48.92 0 4592625..4594106 - 493 74314627 aspA SSON_4322 - aspartate ammonia-lyase 4010 47.77 0 4594398..4594868 + 156 74314628 fxsA SSON_4323 - FxsA 4011 51.87 0 4594890..4596146 - 418 74314629 yjeH SSON_4324 - inner membrane protein YjeH 4012 48.64 0 4596422..4596715 + 97 74314630 groES SSON_4325 - co-chaperonin GroES 4013 53.31 0 4596759..4598405 + 548 74314631 groEL SSON_4326 - chaperonin GroEL 4014 55.30 0 4598510..4598896 + 128 74314632 yjeI SSON_4327 - hypothetical protein 4015 45.96 -1 4599099..4599866 - 255 74314633 yjeJ SSON_4328 - hypothetical protein 4016 54.56 0 4600133..4600636 + 167 74314634 - SSON_4329 - IS1 ORF 4017 53.16 0 4601135..4602163 - 342 74314635 yjeK SSON_4330 - hypothetical protein 4018 49.91 0 4602205..4602771 + 188 74314636 efp SSON_4331 - elongation factor P 4019 54.76 0 4602823..4602948 + 41 74314637 - SSON_4332 - entericidin A 4020 47.62 0 4603059..4603205 + 48 74314638 - SSON_4333 - entericidin B membrane lipoprotein 4021 53.37 0 4603694..4604227 - 177 74314639 blc SSON_4335 - outer membrane lipoprotein Blc 4022 50.53 0 4604316..4605449 - 377 74314640 ampC SSON_4336 - beta-lactamase 4023 53.89 0 4605512..4605871 - 119 74314641 frdD SSON_4337 - fumarate reductase subunit D 4024 49.24 0 4605882..4606277 - 131 74314642 frdC SSON_4338 - fumarate reductase subunit C 4025 53.20 0 4606288..4607022 - 244 74314643 frdB SSON_4339 - fumarate reductase iron-sulfur subunit 4026 56.27 +1 4607015..4608823 - 602 74314644 frdA SSON_4340 - fumarate reductase flavoprotein subunit 4027 52.25 0 4609148..4610125 + 325 161986385 yjeA SSON_4341 - lysyl-tRNA synthetase 4028 54.37 0 4610760..4611263 + 167 74314646 - SSON_4342 - IS1 ORF 4029 55.39 0 4612774..4616097 - 1107 74314647 yjeP SSON_4344 - hypothetical protein 4030 53.25 0 4616119..4617087 - 322 74314648 psd SSON_4345 - phosphatidylserine decarboxylase 4031 53.85 0 4617184..4618236 - 350 161986384 yjeQ SSON_4346 - ribosome-associated GTPase 4032 53.66 0 4618331..4618876 + 181 161986383 yjeR SSON_4347 - oligoribonuclease 4033 52.63 0 4619776..4620915 - 379 74314652 yjeS SSON_4352 - hypothetical protein 4034 57.36 +1 4620914..4622461 + 515 74314651 yjeF SSON_4351 - hypothetical protein 4035 51.52 0 4622433..4622894 + 153 74314653 yjeE SSON_4353 - putative ATPase 4036 55.38 0 4622913..4624250 + 445 74314654 amiB SSON_4354 - N-acetylmuramoyl-l-alanine amidase II 4037 56.33 +1 4624260..4626107 + 615 74314655 mutL SSON_4355 - DNA mismatch repair protein 4038 53.52 0 4626100..4627050 + 316 74314656 miaA SSON_4356 - tRNA delta(2)-isopentenylpyrophosphate transferase 4039 48.87 0 4627136..4627444 + 102 74314657 hfq SSON_4357 - RNA-binding protein Hfq 4040 53.63 0 4627521..4628801 + 426 74314658 hflX SSON_4358 - putative GTPase HflX 4041 56.19 +1 4628887..4630146 + 419 74314659 hflK SSON_4359 - FtsH protease regulator HflK 4042 53.03 0 4630149..4631153 + 334 74314660 hflC SSON_4360 - FtsH protease regulator HflC 4043 48.99 0 4631235..4631432 + 65 74314661 yjeT SSON_4361 - hypothetical protein 4044 53.81 0 4631536..4632834 + 432 74314662 purA SSON_4362 - adenylosuccinate synthetase 4045 48.83 0 4633039..4633464 + 141 74314663 yjeB SSON_4363 - transcriptional repressor NsrR 4046 55.20 0 4633503..4635944 + 813 161986382 vacB SSON_4364 - exoribonuclease R 4047 55.74 0 4636124..4636855 + 243 74314665 yjfH SSON_4365 - 23S rRNA (guanosine-2'-O-)-methyltransferase 4048 54.37 0 4637175..4637678 + 167 74314666 - SSON_4366 - IS1 ORF 4049 52.84 0 4638277..4639440 + 387 74314667 yjfC SSON_4368 - putative synthetase/amidase 4050 54.24 0 4639509..4641149 + 546 74314668 aidB SSON_4369 - isovaleryl CoA dehydrogenase 4051 51.16 0 4641266..4641568 - 100 74314669 yjfN SSON_4370 - hypothetical protein 4052 48.79 0 4641690..4642019 - 109 161986381 yjfO SSON_4371 - hypothetical protein 4053 53.47 0 4642201..4642950 + 249 74314671 yjfP SSON_4372 - esterase 4054 50.66 0 4642947..4643702 - 251 74314672 yjfQ SSON_4373 - transcriptional repressor UlaR 4055 51.73 0 4643810..4644880 - 356 74314673 yjfR SSON_4374 - putative L-ascorbate 6-phosphate lactonase 4056 51.31 0 4646643..4646948 + 101 74314674 sgaB SSON_4376 - L-ascorbate-specific enzyme IIB component of PTS 4057 55.48 0 4646958..4647422 + 154 74314675 ptxA SSON_4377 - L-ascorbate-specific enzyme IIA component of PTS 4058 56.07 +1 4647436..4648086 + 216 74314676 ulaD SSON_4378 - 3-keto-L-gulonate-6-phosphate decarboxylase 4059 57.89 +1 4648096..4648950 + 284 74314677 sgaU SSON_4379 - L-xylulose 5-phosphate 3-epimerase 4060 56.91 +1 4648950..4649636 + 228 74314678 sgaE SSON_4380 - L-ribulose-5-phosphate 4-epimerase 4061 46.74 -1 4649733..4650284 + 183 74314679 yagU SSON_4381 - hypothetical protein 4062 46.95 -1 4650396..4650674 - 92 74314680 yjfY SSON_4382 - hypothetical protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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