IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3947	 57.44	+1	4515803..4516474	+	223	74314565	nrfC	SSON_4253	-	formate-dependent nitrite reductase
3948	 58.10	+1	4516471..4517427	+	318	74314566	nrfD	SSON_4254	-	formate-dependent nitrate reductase complex transmembrane protein
3949	 56.90	+1	4517507..4519165	+	552	74314567	nrfE	SSON_4255	-	heme lyase subunit NrfE
3950	 51.82	0	4519158..4519541	+	127	74314568	nrfF	SSON_4256	-	formate-dependent nitrite reductase complex subunit NrfF
3951	 52.09	0	4519538..4520134	+	198	74314569	nrfG	SSON_4257	-	formate-dependent nitrite reductase complex subunit NrfG
3952	 53.50	0	4520476..4521789	+	437	74314570	gltP	SSON_4258	-	glutamate/aspartate:proton symporter
3953	 49.71	0	4521868..4522557	-	229	74314571	yjcO	SSON_4259	-	hypothetical protein
3954	 56.17	+1	4524996..4526462	-	488	74314572	yjcP	SSON_4261	-	putative outer membrane efflux protein MdtP
3955	 54.63	0	4526459..4528510	-	683	161986388	yjcQ	SSON_4262	-	multidrug efflux system protein MdtO
3956	 56.01	+1	4528510..4529541	-	343	74314574	yjcR	SSON_4263	-	multidrug resistance protein MdtN
3957	 44.75	-1	4529560..4529883	-	107	74314575	-	SSON_4264	-	formate dehydrogenase H
3958	 51.95	0	4530044..4532041	-	665	74314576	yjcS	SSON_4265	-	hypothetical protein
3959	 51.26	0	4532282..4532599	+	105	74314577	rpiB	SSON_4266	-	ribose 5-phosphate isomerase B
3960	 54.85	0	4532668..4532997	+	109	74314578	-	SSON_4267	-	hypothetical protein
3961	 59.16	+1	4533144..4533902	-	252	74314579	phnP	S