IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3944	 56.81	+1	4511407..4513365	-	652	74314562	acs	SSON_4250	-	acetyl-CoA synthetase
3945	 52.54	0	4513759..4515195	+	478	74314563	nrfA	SSON_4251	-	cytochrome c nitrite reductase
3946	 53.93	0	4515234..4515806	+	190	74314564	nrfB	SSON_4252	-	cytochrome c-type protein NrfB
3947	 57.44	+1	4515803..4516474	+	223	74314565	nrfC	SSON_4253	-	formate-dependent nitrite reductase
3948	 58.10	+1	4516471..4517427	+	318	74314566	nrfD	SSON_4254	-	formate-dependent nitrate reductase complex transmembrane protein
3949	 56.90	+1	4517507..4519165	+	552	74314567	nrfE	SSON_4255	-	heme lyase subunit NrfE
3950	 51.82	0	4519158..4519541	+	127	74314568	nrfF	SSON_4256	-	formate-dependent nitrite reductase complex subunit NrfF
3951	 52.09	0	4519538..4520134	+	198	74314569	nrfG	SSON_4257	-	formate-dependent nitrite reductase complex subunit NrfG
3952	 53.50	0	4520476..4521789	+	437	74314570	gltP	SSON_4258	-	glutamate/aspartate:proton symporter
3953	 49.71	0	4521868..4522557	-	229	74314571	yjcO	SSON_4259	-	hypothetical protein
3954	 56.17	+1	4524996..4526462	-	488	74314572	yjcP	SSON_4261	-	putative outer membrane efflux protein MdtP
3955	 54.63	0	4526459..4528510	-	683	161986388	yjcQ	SSON_4262	-	multidrug efflux system protein MdtO
3956	 56.01	+1	4528510..4529541	-	343	74314574	yjcR	SSON_4263	-	multidrug resistance protein MdtN
3957	 44.75	-1	4529560..4529883	-	107	74314575	-	SSON_4264	-	formate dehydrogenase H
3958	 51.95	0	4530044..4532041	-	665	743145