IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3936	 44.68	-1	4499914..4501500	+	528	74314554	yjcC	SSON_4241	-	hypothetical protein
3937	 50.93	0	4501503..4501826	-	107	74314555	soxS	SSON_4242	-	DNA-binding transcriptional regulator SoxS
3938	 54.37	0	4502202..4502705	+	167	74314556	-	SSON_4243	-	IS1 ORF
3939	 55.82	0	4504217..4505866	-	549	74314557	yjcE	SSON_4245	-	hypothetical protein
3940	 56.07	+1	4506018..4507367	-	449	74314558	yjcD	SSON_4246	-	hypothetical protein
3941	 51.63	0	4507913..4508311	-	132	74314559	soxR	SSON_4247	-	redox-sensing activator of soxS
3942	 54.37	0	4508360..4508863	-	167	74314560	-	SSON_4248	-	IS1 ORF
3943	 55.58	0	4509248..4510897	-	549	74314561	actP	SSON_4249	-	acetate permease
3944	 56.81	+1	4511407..4513365	-	652	74314562	acs	SSON_4250	-	acetyl-CoA synthetase
3945	 52.54	0	4513759..4515195	+	478	74314563	nrfA	SSON_4251	-	cytochrome c nitrite reductase
3946	 53.93	0	4515234..4515806	+	190	74314564	nrfB	SSON_4252	-	cytochrome c-type protein NrfB
3947	 57.44	+1	4515803..4516474	+	223	74314565	nrfC	SSON_4253	-	formate-dependent nitrite reductase
3948	 58.10	+1	4516471..4517427	+	318	74314566	nrfD	SSON_4254	-	formate-dependent nitrate reductase complex transmembrane protein
3949	 56.90	+1	4517507..4519165	+	552	74314567	nrfE	SSON_4255	-	heme lyase subunit NrfE
3950	 51.82	0	4519158..4519541	+	127	74314568	nrfF	SSON_4256	-	formate-dependent nitrite reductase complex subunit NrfF
3951	 52.09	0	4519538..4520134	+	198