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Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3933 50.42 0 4495102..4495458 + 118 74314551 yjbR SSON_4237 - hypothetical protein 3934 55.58 0 4495493..4498315 - 940 74314552 uvrA SSON_4238 - excinuclease ABC subunit A 3935 58.10 +1 4498569..4499105 + 178 74314553 ssb SSON_4239 - single-strand DNA-binding protein 3936 44.68 -1 4499914..4501500 + 528 74314554 yjcC SSON_4241 - hypothetical protein 3937 50.93 0 4501503..4501826 - 107 74314555 soxS SSON_4242 - DNA-binding transcriptional regulator SoxS 3938 54.37 0 4502202..4502705 + 167 74314556 - SSON_4243 - IS1 ORF 3939 55.82 0 4504217..4505866 - 549 74314557 yjcE SSON_4245 - hypothetical protein 3940 56.07 +1 4506018..4507367 - 449 74314558 yjcD SSON_4246 - hypothetical protein 3941 51.63 0 4507913..4508311 - 132 74314559 soxR SSON_4247 - redox-sensing activator of soxS 3942 54.37 0 4508360..4508863 - 167 74314560 - SSON_4248 - IS1 ORF 3943 55.58 0 4509248..4510897 - 549 74314561 actP SSON_4249 - acetate permease 3944 56.81 +1 4511407..4513365 - 652 74314562 acs SSON_4250 - acetyl-CoA synthetase 3945 52.54 0 4513759..4515195 + 478 74314563 nrfA SSON_4251 - cytochrome c nitrite reductase 3946 53.93 0 4515234..4515806 + 190 74314564 nrfB SSON_4252 - cytochrome c-type protein NrfB 3947 57.44 +1 4515803..4516474 + 223 74314565 nrfC SSON_4253 - formate-dependent nitrite reductase 3948 58.10 +1 4516471..4517427 + 318 74314566 nrfD SSON_4254 - formate-dependent nitrate reductase complex transmembrane protein 3949 56.90 +1 4517507..4519165 + 552 74314567 nrfE SSON_4255 - heme lyase subunit NrfE 3950 51.82 0 4519158..4519541 + 127 74314568 nrfF SSON_4256 - formate-dependent nitrite reductase complex subunit NrfF 3951 52.09 0 4519538..4520134 + 198 74314569 nrfG SSON_4257 - formate-dependent nitrite reductase complex subunit NrfG 3952 53.50 0 4520476..4521789 + 437 74314570 gltP SSON_4258 - glutamate/aspartate:proton symporter 3953 49.71 0 4521868..4522557 - 229 74314571 yjcO SSON_4259 - hypothetical protein 3954 56.17 +1 4524996..4526462 - 488 74314572 yjcP SSON_4261 - putative outer membrane efflux protein MdtP 3955 54.63 0 4526459..4528510 - 683 161986388 yjcQ SSON_4262 - multidrug efflux system protein MdtO 3956 56.01 +1 4528510..4529541 - 343 74314574 yjcR SSON_4263 - multidrug resistance protein MdtN 3957 44.75 -1 4529560..4529883 - 107 74314575 - SSON_4264 - formate dehydrogenase H 3958 51.95 0 4530044..4532041 - 665 74314576 yjcS SSON_4265 - hypothetical protein 3959 51.26 0 4532282..4532599 + 105 74314577 rpiB SSON_4266 - ribose 5-phosphate isomerase B 3960 54.85 0 4532668..4532997 + 109 74314578 - SSON_4267 - hypothetical protein 3961 59.16 +1 4533144..4533902 - 252 74314579 phnP SSON_4268 - carbon-phosphorus lyase complex accessory protein 3962 58.39 +1 4533904..4534338 - 144 74314580 phnO SSON_4269 - aminoalkylphosphonic acid N-acetyltransferase 3963 60.93 +2 4534325..4534882 - 185 74314581 phnN SSON_4270 - ribose 1,5-bisphosphokinase 3964 61.13 +2 4534882..4536018 - 378 74314582 phnM SSON_4271 - phosphonate metabolism 3965 61.23 +2 4536015..4536695 - 226 74314583 phnL SSON_4272 - ATP-binding component of phosphonate transport 3966 61.26 +2 4536806..4537564 - 252 74314584 phnK SSON_4273 - phosphonates transport ATP-binding protein 3967 57.92 +1 4537561..4538406 - 281 74314585 phnJ SSON_4274 - phosphonate metabolism 3968 61.41 +2 4538399..4539463 - 354 74314586 phnI SSON_4275 - phosphonate metabolism 3969 61.88 +2 4539463..4540047 - 194 74314587 phnH SSON_4276 - carbon-phosphorus lyase complex subunit 3970 61.81 +2 4540044..4540496 - 150 74314588 phnG SSON_4277 - phosphonate metabolism 3971 61.29 +2 4540497..4541222 - 241 74314589 phnF SSON_4278 - putative transcriptional regulator 3972 61.15 +2 4541243..4542022 - 259 74314590 phnE SSON_4279 - membrane channel protein component of Pn transporter 3973 54.57 0 4542148..4543164 - 338 74314591 phnD SSON_4280 - periplasmic binding protein component of Pn transporter 3974 58.81 +1 4543189..4543977 - 262 74314592 phnC SSON_4281 - phosphonate/organophosphate ester transporter subunit 3975 46.13 -1 4544711..4545046 - 111 74314593 phnA SSON_4283 - hypothetical protein 3976 51.46 0 4545459..4547687 + 742 74314594 yjdA SSON_4284 - hypothetical protein 3977 56.35 +1 4547717..4548550 + 277 74314595 yjcZ SSON_4285 - hypothetical protein 3978 50.23 0 4548814..4550316 + 500 74314596 proP SSON_4286 - proline/glycine betaine transporter 3979 54.30 0 4550493..4551584 - 363 74314597 basS SSON_4287 - sensor protein BasS/PmrB 3980 53.06 0 4551594..4552262 - 222 74314598 basR SSON_4288 - DNA-binding transcriptional regulator BasR 3981 49.76 0 4552259..4553932 - 557 74314599 yjdB SSON_4289 - putative cell division protein 3982 54.19 0 4554006..4555343 - 445 74314600 yjdE SSON_4290 - arginine:agmatin antiporter 3983 41.34 -2 4555480..4556241 - 253 74314601 adiY SSON_4291 - putative ARAC-type regulatory protein 3984 52.62 0 4556566..4558836 - 756 74314602 adiA SSON_4292 - biodegradative arginine decarboxylase 3985 50.06 0 4559032..4559940 - 302 74314603 melR SSON_4293 - DNA-binding transcriptional regulator MelR 3986 51.99 0 4560223..4561578 + 451 74314604 melA SSON_4294 - alpha-galactosidase 3987 55.19 0 4562949..4563854 + 301 161986387 - SSON_4296 - insertion element IS2 transposase InsD 3988 54.37 0 4564850..4565353 + 167 74314606 - SSON_4297 - IS1 ORF 3989 53.88 0 4565288..4565983 - 231 74314607 yjdF SSON_4298 - hypothetical protein 3990 54.16 0 4566106..4567752 - 548 74314608 fumB SSON_4299 - fumarase B 3991 52.50 0 4567830..4569170 - 446 74314609 dcuB SSON_4300 - anaerobic C4-dicarboxylate transporter 3992 49.17 0 4569741..4570460 - 239 74314610 yjdG SSON_4301 - DNA-binding transcriptional activator DcuR 3993 50.18 0 4570457..4572088 - 543 74314611 yjdH SSON_4302 - sensory histidine kinase DcuS 3994 48.48 0 4572269..4572499 + 76 74314612 yjdI SSON_4303 - hypothetical protein 3995 41.76 -2 4572511..4572783 + 90 74314613 yjdJ SSON_4304 - hypothetical protein 3996 34.34 -2 4573010..4573306 + 98 74314614 yjdK SSON_4305 - hypothetical protein 3997 47.36 -1 4573626..4575143 - 505 74314615 lysU SSON_4306 - lysyl-tRNA synthetase 3998 51.23 0 4575380..4576837 - 485 74314616 yjdL SSON_4307 - putative peptide transporter 3999 52.10 0 4577199..4577912 - 237 74314617 - SSON_4309 - IS600 ORF2 4000 46.53 -1 4578053..4578355 - 100 74314618 - SSON_4310 - IS600 ORF1 4001 55.08 0 4579314..4580219 - 301 161986386 - SSON_4311 - insertion element IS2 transposase InsD 4002 46.20 -1 4582185..4582487 + 100 74314620 - SSON_4312 - IS600 ORF1 4003 51.96 0 4582628..4583341 + 237 74314621 - SSON_4313 - IS600 ORF2 4004 53.90 0 4583428..4584774 + 448 74314622 - SSON_4314 - IS4 orf 4005 53.50 0 4588467..4589066 - 199 74314623 yjdC SSON_4318 - putative transcriptional regulator 4006 53.77 0 4589079..4590776 - 565 74314624 dipZ SSON_4319 - thiol:disulfide interchange protein precursor 4007 50.44 0 4590752..4591090 - 112 74314625 cutA SSON_4320 - divalent-cation tolerance protein CutA 4008 52.38 0 4591206..4592507 - 433 74314626 dcuA SSON_4321 - anaerobic C4-dicarboxylate transporter 4009 48.92 0 4592625..4594106 - 493 74314627 aspA SSON_4322 - aspartate ammonia-lyase 4010 47.77 0 4594398..4594868 + 156 74314628 fxsA SSON_4323 - FxsA 4011 51.87 0 4594890..4596146 - 418 74314629 yjeH SSON_4324 - inner membrane protein YjeH 4012 48.64 0 4596422..4596715 + 97 74314630 groES SSON_4325 - co-chaperonin GroES 4013 53.31 0 4596759..4598405 + 548 74314631 groEL SSON_4326 - chaperonin GroEL 4014 55.30 0 4598510..4598896 + 128 74314632 yjeI SSON_4327 - hypothetical protein 4015 45.96 -1 4599099..4599866 - 255 74314633 yjeJ SSON_4328 - hypothetical protein 4016 54.56 0 4600133..4600636 + 167 74314634 - SSON_4329 - IS1 ORF 4017 53.16 0 4601135..4602163 - 342 74314635 yjeK SSON_4330 - hypothetical protein 4018 49.91 0 4602205..4602771 + 188 74314636 efp SSON_4331 - elongation factor P 4019 54.76 0 4602823..4602948 + 41 74314637 - SSON_4332 - entericidin A 4020 47.62 0 4603059..4603205 + 48 74314638 - SSON_4333 - entericidin B membrane lipoprotein 4021 53.37 0 4603694..4604227 - 177 74314639 blc SSON_4335 - outer membrane lipoprotein Blc 4022 50.53 0 4604316..4605449 - 377 74314640 ampC SSON_4336 - beta-lactamase 4023 53.89 0 4605512..4605871 - 119 74314641 frdD SSON_4337 - fumarate reductase subunit D 4024 49.24 0 4605882..4606277 - 131 74314642 frdC SSON_4338 - fumarate reductase subunit C 4025 53.20 0 4606288..4607022 - 244 74314643 frdB SSON_4339 - fumarate reductase iron-sulfur subunit 4026 56.27 +1 4607015..4608823 - 602 74314644 frdA SSON_4340 - fumarate reductase flavoprotein subunit 4027 52.25 0 4609148..4610125 + 325 161986385 yjeA SSON_4341 - lysyl-tRNA synthetase 4028 54.37 0 4610760..4611263 + 167 74314646 - SSON_4342 - IS1 ORF 4029 55.39 0 4612774..4616097 - 1107 74314647 yjeP SSON_4344 - hypothetical protein 4030 53.25 0 4616119..4617087 - 322 74314648 psd SSON_4345 - phosphatidylserine decarboxylase 4031 53.85 0 4617184..4618236 - 350 161986384 yjeQ SSON_4346 - ribosome-associated GTPase 4032 53.66 0 4618331..4618876 + 181 161986383 yjeR SSON_4347 - oligoribonuclease 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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