IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3928	 53.60	0	4488737..4490152	+	471	74314546	dnaB	SSON_4232	-	replicative DNA helicase
3929	 55.37	0	4490205..4491284	+	359	74314547	alr	SSON_4233	-	alanine racemase
3930	 52.68	0	4491537..4492730	+	397	74314548	tyrB	SSON_4234	-	aromatic amino acid aminotransferase
3931	 49.30	0	4493858..4494571	+	237	74314549	aphA	SSON_4235	-	acid phosphatase/phosphotransferase
3932	 51.56	0	4494682..4495098	+	138	74314550	yjbQ	SSON_4236	-	hypothetical protein
3933	 50.42	0	4495102..4495458	+	118	74314551	yjbR	SSON_4237	-	hypothetical protein
3934	 55.58	0	4495493..4498315	-	940	74314552	uvrA	SSON_4238	-	excinuclease ABC subunit A
3935	 58.10	+1	4498569..4499105	+	178	74314553	ssb	SSON_4239	-	single-strand DNA-binding protein
3936	 44.68	-1	4499914..4501500	+	528	74314554	yjcC	SSON_4241	-	hypothetical protein
3937	 50.93	0	4501503..4501826	-	107	74314555	soxS	SSON_4242	-	DNA-binding transcriptional regulator SoxS
3938	 54.37	0	4502202..4502705	+	167	74314556	-	SSON_4243	-	IS1 ORF
3939	 55.82	0	4504217..4505866	-	549	74314557	yjcE	SSON_4245	-	hypothetical protein
3940	 56.07	+1	4506018..4507367	-	449	74314558	yjcD	SSON_4246	-	hypothetical protein
3941	 51.63	0	4507913..4508311	-	132	74314559	soxR	SSON_4247	-	redox-sensing activator of soxS
3942	 54.37	0	4508360..4508863	-	167	74314560	-	SSON_4248	-	IS1 ORF
3943	 55.58	0	4509248..4510897	-	549