IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3923	 28.63	-2	4484744..4484998	+	84	74314541	yjbL	SSON_4227	-	hypothetical protein
3924	 36.72	-2	4485022..4485729	+	235	74314542	yjbM	SSON_4228	-	hypothetical protein
3925	 53.47	0	4486092..4487129	+	345	74314543	yjbN	SSON_4229	-	tRNA-dihydrouridine synthase A
3926	 49.79	0	4487263..4487505	+	80	161986389	pspG	SSON_4230	-	phage shock protein G
3927	 52.85	0	4487671..4488654	-	327	74314545	qor	SSON_4231	-	quinone oxidoreductase, NADPH-dependent
3928	 53.60	0	4488737..4490152	+	471	74314546	dnaB	SSON_4232	-	replicative DNA helicase
3929	 55.37	0	4490205..4491284	+	359	74314547	alr	SSON_4233	-	alanine racemase
3930	 52.68	0	4491537..4492730	+	397	74314548	tyrB	SSON_4234	-	aromatic amino acid aminotransferase
3931	 49.30	0	4493858..4494571	+	237	74314549	aphA	SSON_4235	-	acid phosphatase/phosphotransferase
3932	 51.56	0	4494682..4495098	+	138	74314550	yjbQ	SSON_4236	-	hypothetical protein
3933	 50.42	0	4495102..4495458	+	118	74314551	yjbR	SSON_4237	-	hypothetical protein
3934	 55.58	0	4495493..4498315	-	940	74314552	uvrA	SSON_4238	-	excinuclease ABC subunit A
3935	 58.10	+1	4498569..4499105	+	178	74314553	ssb	SSON_4239	-	single-strand DNA-binding protein
3936	 44.68	-1	4499914..4501500	+	528	74314554	yjcC	SSON_4241	-	hypothetical protein
3937	 50.93	0	4501503..4501826	-	107	74314555	soxS	SSON_4242	-	DNA-binding transcriptional regulator SoxS
3938	 54.37	0	4502202..4502705	+	167