IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3911	 51.83	0	4469524..4470864	+	446	74314529	lamB	SSON_4214	-	maltoporin
3912	 53.53	0	4471016..4471936	+	306	74314530	malM	SSON_4215	-	maltose regulon periplasmic protein
3913	 51.08	0	4473023..4474042	-	339	74314531	-	SSON_4216	-	putative transposase
3914	 49.38	0	4475258..4476385	-	375	74314532	-	SSON_4218	-	putative transposase
3915	 52.41	0	4476929..4477426	+	165	161986393	ubiC	SSON_4219	-	chorismate pyruvate lyase
3916	 51.43	0	4477439..4478311	+	290	74314534	ubiA	SSON_4220	-	4-hydroxybenzoate octaprenyltransferase
3917	 55.28	0	4478466..4480889	-	807	161986392	plsB	SSON_4221	-	glycerol-3-phosphate acyltransferase
3918	 51.76	0	4481060..4481428	+	122	74314536	dgkA	SSON_4222	-	diacylglycerol kinase
3919	 52.22	0	4481538..4482146	+	202	74314537	lexA	SSON_4223	-	LexA repressor
3920	 55.43	0	4482219..4483544	+	441	161986391	dinF	SSON_4224	-	DNA-damage-inducible SOS response protein
3921	 42.38	-2	4483660..4483869	+	69	74314539	yjbJ	SSON_4225	-	putative stress-response protein
3922	 52.91	0	4483911..4484426	-	171	161986390	yjbK	SSON_4226	-	zinc uptake transcriptional repressor
3923	 28.63	-2	4484744..4484998	+	84	74314541	yjbL	SSON_4227	-	hypothetical protein
3924	 36.72	-2	4485022..4485729	+	235	74314542	yjbM	SSON_4228	-	hypothetical protein
3925	 53.47	0	4486092..4487129	+	345	74314543	yjbN	SSON_4229	-	tRNA-dihydrouridine synthase A
3926	 49.79	0	4487263..4487505	+	80