version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3903 57.99 +1 4458450..4459187 + 245 74314521 yjbG SSON_4206 - hypothetical protein 3904 54.17 0 4459187..4461283 + 698 74314522 yjbH SSON_4207 - hypothetical protein 3905 48.91 0 4461878..4462288 + 136 74314523 yjbA SSON_4208 - phosphate-starvation-inducible protein PsiE 3906 48.98 0 4462332..4463807 - 491 74314524 xylE SSON_4209 - D-xylose transporter XylE 3907 54.55 0 4464179..4465069 - 296 74314525 malG SSON_4210 - maltose transporter permease 3908 52.56 0 4465084..4466628 - 514 74314526 malF SSON_4211 - maltose transporter membrane protein 3909 50.97 0 4466782..4467972 - 396 74314527 malE SSON_4212 - maltose ABC transporter periplasmic protein 3910 55.11 0 4468337..4469452 + 371 74314528 malK SSON_4213 - maltose/maltodextrin transporter ATP-binding protein 3911 51.83 0 4469524..4470864 + 446 74314529 lamB SSON_4214 - maltoporin 3912 53.53 0 4471016..4471936 + 306 74314530 malM SSON_4215 - maltose regulon periplasmic protein 3913 51.08 0 4473023..4474042 - 339 74314531 - SSON_4216 - putative transposase 3914 49.38 0 4475258..4476385 - 375 74314532 - SSON_4218 - putative transposase 3915 52.41 0 4476929..4477426 + 165 161986393 ubiC SSON_4219 - chorismate pyruvate lyase 3916 51.43 0 4477439..4478311 + 290 74314534 ubiA SSON_4220 - 4-hydroxybenzoate octaprenyltransferase 3917 55.28 0 4478466..4480889 - 807 161986392 plsB SSON_4221 - glycerol-3-phosphate acyltransferase 3918 51.76 0 4481060..4481428 + 122 74314536 dgkA SSON_4222 - diacylglycerol kinase 3919 52.22 0 4481538..4482146 + 202 74314537 lexA SSON_4223 - LexA repressor 3920 55.43 0 4482219..4483544 + 441 161986391 dinF SSON_4224 - DNA-damage-inducible SOS response protein 3921 42.38 -2 4483660..4483869 + 69 74314539 yjbJ SSON_4225 - putative stress-response protein 3922 52.91 0 4483911..4484426 - 171 161986390 yjbK SSON_4226 - zinc uptake transcriptional repressor 3923 28.63 -2 4484744..4484998 + 84 74314541 yjbL SSON_4227 - hypothetical protein 3924 36.72 -2 4485022..4485729 + 235 74314542 yjbM SSON_4228 - hypothetical protein 3925 53.47 0 4486092..4487129 + 345 74314543 yjbN SSON_4229 - tRNA-dihydrouridine synthase A 3926 49.79 0 4487263..4487505 + 80 161986389 pspG SSON_4230 - phage shock protein G 3927 52.85 0 4487671..4488654 - 327 74314545 qor SSON_4231 - quinone oxidoreductase, NADPH-dependent 3928 53.60 0 4488737..4490152 + 471 74314546 dnaB SSON_4232 - replicative DNA helicase 3929 55.37 0 4490205..4491284 + 359 74314547 alr SSON_4233 - alanine racemase 3930 52.68 0 4491537..4492730 + 397 74314548 tyrB SSON_4234 - aromatic amino acid aminotransferase 3931 49.30 0 4493858..4494571 + 237 74314549 aphA SSON_4235 - acid phosphatase/phosphotransferase 3932 51.56 0 4494682..4495098 + 138 74314550 yjbQ SSON_4236 - hypothetical protein 3933 50.42 0 4495102..4495458 + 118 74314551 yjbR SSON_4237 - hypothetical protein 3934 55.58 0 4495493..4498315 - 940 74314552 uvrA SSON_4238 - excinuclease ABC subunit A 3935 58.10 +1 4498569..4499105 + 178 74314553 ssb SSON_4239 - single-strand DNA-binding protein 3936 44.68 -1 4499914..4501500 + 528 74314554 yjcC SSON_4241 - hypothetical protein 3937 50.93 0 4501503..4501826 - 107 74314555 soxS SSON_4242 - DNA-binding transcriptional regulator SoxS 3938 54.37 0 4502202..4502705 + 167 74314556 - SSON_4243 - IS1 ORF 3939 55.82 0 4504217..4505866 - 549 74314557 yjcE SSON_4245 - hypothetical protein 3940 56.07 +1 4506018..4507367 - 449 74314558 yjcD SSON_4246 - hypothetical protein 3941 51.63 0 4507913..4508311 - 132 74314559 soxR SSON_4247 - redox-sensing activator of soxS 3942 54.37 0 4508360..4508863 - 167 74314560 - SSON_4248 - IS1 ORF 3943 55.58 0 4509248..4510897 - 549 74314561 actP SSON_4249 - acetate permease 3944 56.81 +1 4511407..4513365 - 652 74314562 acs SSON_4250 - acetyl-CoA synthetase 3945 52.54 0 4513759..4515195 + 478 74314563 nrfA SSON_4251 - cytochrome c nitrite reductase 3946 53.93 0 4515234..4515806 + 190 74314564 nrfB SSON_4252 - cytochrome c-type protein NrfB 3947 57.44 +1 4515803..4516474 + 223 74314565 nrfC SSON_4253 - formate-dependent nitrite reductase 3948 58.10 +1 4516471..4517427 + 318 74314566 nrfD SSON_4254 - formate-dependent nitrate reductase complex transmembrane protein 3949 56.90 +1 4517507..4519165 + 552 74314567 nrfE SSON_4255 - heme lyase subunit NrfE 3950 51.82 0 4519158..4519541 + 127 74314568 nrfF SSON_4256 - formate-dependent nitrite reductase complex subunit NrfF 3951 52.09 0 4519538..4520134 + 198 74314569 nrfG SSON_4257 - formate-dependent nitrite reductase complex subunit NrfG 3952 53.50 0 4520476..4521789 + 437 74314570 gltP SSON_4258 - glutamate/aspartate:proton symporter 3953 49.71 0 4521868..4522557 - 229 74314571 yjcO SSON_4259 - hypothetical protein 3954 56.17 +1 4524996..4526462 - 488 74314572 yjcP SSON_4261 - putative outer membrane efflux protein MdtP 3955 54.63 0 4526459..4528510 - 683 161986388 yjcQ SSON_4262 - multidrug efflux system protein MdtO 3956 56.01 +1 4528510..4529541 - 343 74314574 yjcR SSON_4263 - multidrug resistance protein MdtN 3957 44.75 -1 4529560..4529883 - 107 74314575 - SSON_4264 - formate dehydrogenase H 3958 51.95 0 4530044..4532041 - 665 74314576 yjcS SSON_4265 - hypothetical protein 3959 51.26 0 4532282..4532599 + 105 74314577 rpiB SSON_4266 - ribose 5-phosphate isomerase B 3960 54.85 0 4532668..4532997 + 109 74314578 - SSON_4267 - hypothetical protein 3961 59.16 +1 4533144..4533902 - 252 74314579 phnP SSON_4268 - carbon-phosphorus lyase complex accessory protein 3962 58.39 +1 4533904..4534338 - 144 74314580 phnO SSON_4269 - aminoalkylphosphonic acid N-acetyltransferase 3963 60.93 +2 4534325..4534882 - 185 74314581 phnN SSON_4270 - ribose 1,5-bisphosphokinase 3964 61.13 +2 4534882..4536018 - 378 74314582 phnM SSON_4271 - phosphonate metabolism 3965 61.23 +2 4536015..4536695 - 226 74314583 phnL SSON_4272 - ATP-binding component of phosphonate transport 3966 61.26 +2 4536806..4537564 - 252 74314584 phnK SSON_4273 - phosphonates transport ATP-binding protein 3967 57.92 +1 4537561..4538406 - 281 74314585 phnJ SSON_4274 - phosphonate metabolism 3968 61.41 +2 4538399..4539463 - 354 74314586 phnI SSON_4275 - phosphonate metabolism 3969 61.88 +2 4539463..4540047 - 194 74314587 phnH SSON_4276 - carbon-phosphorus lyase complex subunit 3970 61.81 +2 4540044..4540496 - 150 74314588 phnG SSON_4277 - phosphonate metabolism 3971 61.29 +2 4540497..4541222 - 241 74314589 phnF SSON_4278 - putative transcriptional regulator 3972 61.15 +2 4541243..4542022 - 259 74314590 phnE SSON_4279 - membrane channel protein component of Pn transporter 3973 54.57 0 4542148..4543164 - 338 74314591 phnD SSON_4280 - periplasmic binding protein component of Pn transporter 3974 58.81 +1 4543189..4543977 - 262 74314592 phnC SSON_4281 - phosphonate/organophosphate ester transporter subunit 3975 46.13 -1 4544711..4545046 - 111 74314593 phnA SSON_4283 - hypothetical protein 3976 51.46 0 4545459..4547687 + 742 74314594 yjdA SSON_4284 - hypothetical protein 3977 56.35 +1 4547717..4548550 + 277 74314595 yjcZ SSON_4285 - hypothetical protein 3978 50.23 0 4548814..4550316 + 500 74314596 proP SSON_4286 - proline/glycine betaine transporter 3979 54.30 0 4550493..4551584 - 363 74314597 basS SSON_4287 - sensor protein BasS/PmrB 3980 53.06 0 4551594..4552262 - 222 74314598 basR SSON_4288 - DNA-binding transcriptional regulator BasR 3981 49.76 0 4552259..4553932 - 557 74314599 yjdB SSON_4289 - putative cell division protein 3982 54.19 0 4554006..4555343 - 445 74314600 yjdE SSON_4290 - arginine:agmatin antiporter 3983 41.34 -2 4555480..4556241 - 253 74314601 adiY SSON_4291 - putative ARAC-type regulatory protein 3984 52.62 0 4556566..4558836 - 756 74314602 adiA SSON_4292 - biodegradative arginine decarboxylase 3985 50.06 0 4559032..4559940 - 302 74314603 melR SSON_4293 - DNA-binding transcriptional regulator MelR 3986 51.99 0 4560223..4561578 + 451 74314604 melA SSON_4294 - alpha-galactosidase 3987 55.19 0 4562949..4563854 + 301 161986387 - SSON_4296 - insertion element IS2 transposase InsD 3988 54.37 0 4564850..4565353 + 167 74314606 - SSON_4297 - IS1 ORF 3989 53.88 0 4565288..4565983 - 231 74314607 yjdF SSON_4298 - hypothetical protein 3990 54.16 0 4566106..4567752 - 548 74314608 fumB SSON_4299 - fumarase B 3991 52.50 0 4567830..4569170 - 446 74314609 dcuB SSON_4300 - anaerobic C4-dicarboxylate transporter 3992 49.17 0 4569741..4570460 - 239 74314610 yjdG SSON_4301 - DNA-binding transcriptional activator DcuR 3993 50.18 0 4570457..4572088 - 543 74314611 yjdH SSON_4302 - sensory histidine kinase DcuS 3994 48.48 0 4572269..4572499 + 76 74314612 yjdI SSON_4303 - hypothetical protein 3995 41.76 -2 4572511..4572783 + 90 74314613 yjdJ SSON_4304 - hypothetical protein 3996 34.34 -2 4573010..4573306 + 98 74314614 yjdK SSON_4305 - hypothetical protein 3997 47.36 -1 4573626..4575143 - 505 74314615 lysU SSON_4306 - lysyl-tRNA synthetase 3998 51.23 0 4575380..4576837 - 485 74314616 yjdL SSON_4307 - putative peptide transporter 3999 52.10 0 4577199..4577912 - 237 74314617 - SSON_4309 - IS600 ORF2 4000 46.53 -1 4578053..4578355 - 100 74314618 - SSON_4310 - IS600 ORF1 4001 55.08 0 4579314..4580219 - 301 161986386 - SSON_4311 - insertion element IS2 transposase InsD 4002 46.20 -1 4582185..4582487 + 100 74314620 - SSON_4312 - IS600 ORF1 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0