IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3896	 51.43	0	4449884..4450690	-	268	74314514	sorD	SSON_4198	-	sorbitol-6-phosphate 2-dehydrogenase
3897	 51.89	0	4451945..4452817	+	290	74314515	yjbC	SSON_4200	-	23S rRNA pseudouridine synthase F
3898	 50.18	0	4452950..4453222	-	90	74314516	yjbD	SSON_4201	-	hypothetical protein
3899	 54.15	0	4453474..4454823	-	449	74314517	lysC	SSON_4202	-	aspartate kinase III
3900	 51.70	0	4455348..4456997	+	549	74314518	pgi	SSON_4203	-	glucose-6-phosphate isomerase
3901	 60.08	+2	4457459..4457701	+	80	74314519	yjbE	SSON_4204	-	hypothetical protein
3902	 54.26	0	4457785..4458453	+	222	74314520	yjbF	SSON_4205	-	hypothetical protein
3903	 57.99	+1	4458450..4459187	+	245	74314521	yjbG	SSON_4206	-	hypothetical protein
3904	 54.17	0	4459187..4461283	+	698	74314522	yjbH	SSON_4207	-	hypothetical protein
3905	 48.91	0	4461878..4462288	+	136	74314523	yjbA	SSON_4208	-	phosphate-starvation-inducible protein PsiE
3906	 48.98	0	4462332..4463807	-	491	74314524	xylE	SSON_4209	-	D-xylose transporter XylE
3907	 54.55	0	4464179..4465069	-	296	74314525	malG	SSON_4210	-	maltose transporter permease
3908	 52.56	0	4465084..4466628	-	514	74314526	malF	SSON_4211	-	maltose transporter membrane protein
3909	 50.97	0	4466782..4467972	-	396	74314527	malE	SSON_4212	-	maltose ABC transporter periplasmic protein
3910	 55.11	0	4468337..4469452	+	371	74314528	malK	SSON_4213	-	maltose/maltodextrin transporter ATP-binding protein
3911	 51.83	0	4469524..4470864	+	446