IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3887	 54.17	0	4436210..4436713	-	167	74314505	-	SSON_4188	-	IS1 ORF
3888	 53.94	0	4438274..4439098	-	274	161986394	iclR	SSON_4189	-	transcriptional repressor IclR
3889	 55.89	+1	4439298..4442981	+	1227	74314507	metH	SSON_4190	-	B12-dependent methionine synthase
3890	 55.39	0	4443201..4444832	+	543	74314508	yjbB	SSON_4191	-	putative alpha helix protein
3891	 54.93	0	4444923..4445612	-	229	74314509	pepE	SSON_4192	-	peptidase E
3892	 53.67	0	4445995..4447110	-	371	74314510	sorE	SSON_4193	-	putative L-sorbose-1-P-reductase
3893	 54.67	0	4447275..4448099	-	274	74314511	sorM	SSON_4194	-	putative sorbose-permease PTS system IID component
3894	 53.13	0	4448110..4448907	-	265	74314512	sorA	SSON_4195	-	putative sorbose-permease PTS system IIC component
3895	 52.45	0	4449467..4449874	-	135	74314513	sorF	SSON_4197	-	putative sorbose-permease PTS system IIA component
3896	 51.43	0	4449884..4450690	-	268	74314514	sorD	SSON_4198	-	sorbitol-6-phosphate 2-dehydrogenase
3897	 51.89	0	4451945..4452817	+	290	74314515	yjbC	SSON_4200	-	23S rRNA pseudouridine synthase F
3898	 50.18	0	4452950..4453222	-	90	74314516	yjbD	SSON_4201	-	hypothetical protein
3899	 54.15	0	4453474..4454823	-	449	74314517	lysC	SSON_4202	-	aspartate kinase III
3900	 51.70	0	4455348..4456997	+	549	74314518	pgi	SSON_4203	-	glucose-6-phosphate isomerase
3901	 60.08	+2	4457459..4457701	+	80	74314519	yjbE	SSON_4204	-	hypothetical protein
3902	 54.26	0	4457785..4458453	+	222