IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3881	 58.22	+1	4422833..4424122	-	429	74314499	purD	SSON_4178	-	phosphoribosylamine--glycine ligase
3882	 56.16	+1	4424134..4425723	-	529	74314500	purH	SSON_4179	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
3883	 53.15	0	4431465..4431908	-	147	74314501	yjaB	SSON_4184	-	hypothetical protein
3884	 50.54	0	4432065..4432994	+	309	74314502	metA	SSON_4185	-	homoserine O-succinyltransferase
3885	 51.91	0	4433263..4434705	+	480	74314503	aceB	SSON_4186	-	malate synthase
3886	 55.44	0	4434894..4436006	+	370	74314504	aceA	SSON_4187	-	isocitrate lyase
3887	 54.17	0	4436210..4436713	-	167	74314505	-	SSON_4188	-	IS1 ORF
3888	 53.94	0	4438274..4439098	-	274	161986394	iclR	SSON_4189	-	transcriptional repressor IclR
3889	 55.89	+1	4439298..4442981	+	1227	74314507	metH	SSON_4190	-	B12-dependent methionine synthase
3890	 55.39	0	4443201..4444832	+	543	74314508	yjbB	SSON_4191	-	putative alpha helix protein
3891	 54.93	0	4444923..4445612	-	229	74314509	pepE	SSON_4192	-	peptidase E
3892	 53.67	0	4445995..4447110	-	371	74314510	sorE	SSON_4193	-	putative L-sorbose-1-P-reductase
3893	 54.67	0	4447275..4448099	-	274	74314511	sorM	SSON_4194	-	putative sorbose-permease PTS system IID component
3894	 53.13	0	4448110..4448907	-	265	74314512	sorA	SSON_4195	-	putative sorbose-permease PTS system IIC component
3895	 52.45	0	4449467..4449874	-	135	74314513	sorF	SSON_4197	-	putative sorbose-permease PTS system