IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3867	 55.22	0	4410848..4411048	-	66	74314485	thiS	SSON_4164	-	sulfur carrier protein ThiS
3868	 56.75	+1	4411032..4411787	-	251	161986397	thiF	SSON_4165	-	hypothetical protein
3869	 58.02	+1	4411780..4412415	-	211	74314487	thiE	SSON_4166	-	thiamine-phosphate pyrophosphorylase
3870	 55.75	0	4412415..4414310	-	631	74314488	thiC	SSON_4167	-	thiamine biosynthesis protein ThiC
3871	 49.48	0	4414544..4415020	-	158	74314489	yjaE	SSON_4168	-	anti-RNA polymerase sigma 70 factor
3872	 53.10	0	4415115..4415888	+	257	74314490	nudC	SSON_4169	-	NADH pyrophosphatase
3873	 55.87	+1	4415928..4416992	+	354	74314491	hemE	SSON_4170	-	uroporphyrinogen decarboxylase
3874	 58.48	+1	4417002..4417673	+	223	161986396	nfi	SSON_4171	-	endonuclease V
3875	 48.39	0	4417716..4418306	+	196	74314493	yjaG	SSON_4172	-	hypothetical protein
3876	 47.99	0	4418493..4418765	+	90	74314494	hupA	SSON_4173	-	transcriptional regulator HU subunit alpha
3877	 53.45	0	4418778..4419473	+	231	74314495	yjaH	SSON_4174	-	hypothetical protein
3878	 53.52	0	4419475..4419900	-	141	161986395	zraP	SSON_4175	-	zinc resistance protein
3879	 54.76	0	4420138..4421514	+	458	74314497	hydH	SSON_4176	-	sensor protein ZraS
3880	 56.71	+1	4421511..4422836	+	441	74314498	hydG	SSON_4177	-	transcriptional regulatory protein ZraR
3881	 58.22	+1	4422833..4424122	-	429	74314499	purD	SSON_4178	-	phosphoribosylamine--glycine ligase
3882	 56.16	+1	4424134..4425723	-	529