IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3860	 51.77	0	4398010..4398714	+	234	74314478	rplA	SSON_4157	-	50S ribosomal protein L1
3861	 52.21	0	4399127..4399624	+	165	74314479	rplJ	SSON_4158	-	50S ribosomal protein L10
3862	 46.17	-1	4399691..4400056	+	121	74314480	rplL	SSON_4159	-	50S ribosomal protein L7/L12
3863	 52.69	0	4400376..4404404	+	1342	74314481	rpoB	SSON_4160	-	DNA-directed RNA polymerase subunit beta
3864	 53.91	0	4404481..4408704	+	1407	74314482	rpoC	SSON_4161	-	DNA-directed RNA polymerase subunit beta'
3865	 54.94	0	4408946..4410079	-	377	74314483	thiH	SSON_4162	-	thiamine biosynthesis protein ThiH
3866	 57.98	+1	4410076..4410846	-	256	161986398	thiG	SSON_4163	-	thiazole synthase
3867	 55.22	0	4410848..4411048	-	66	74314485	thiS	SSON_4164	-	sulfur carrier protein ThiS
3868	 56.75	+1	4411032..4411787	-	251	161986397	thiF	SSON_4165	-	hypothetical protein
3869	 58.02	+1	4411780..4412415	-	211	74314487	thiE	SSON_4166	-	thiamine-phosphate pyrophosphorylase
3870	 55.75	0	4412415..4414310	-	631	74314488	thiC	SSON_4167	-	thiamine biosynthesis protein ThiC
3871	 49.48	0	4414544..4415020	-	158	74314489	yjaE	SSON_4168	-	anti-RNA polymerase sigma 70 factor
3872	 53.10	0	4415115..4415888	+	257	74314490	nudC	SSON_4169	-	NADH pyrophosphatase
3873	 55.87	+1	4415928..4416992	+	354	74314491	hemE	SSON_4170	-	uroporphyrinogen decarboxylase
3874	 58.48	+1	4417002..4417673	+	223	161986396	nfi	SSON_4171	-	endonuclease V
3875	 48.39	0	4417716..4418306	+	196