IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3854	 44.37	-1	4393207..4394157	-	316	74314472	coaA	SSON_4147	-	pantothenate kinase
3855	 39.74	-2	4394344..4394499	-	51	74314473	-	SSON_4148	-	hypothetical protein
3856	 53.16	0	4395075..4396259	+	394	74314474	tufB	SSON_4153	-	elongation factor Tu
3857	 55.21	0	4396489..4396872	+	127	74314475	secE	SSON_4154	-	preprotein translocase subunit SecE
3858	 51.47	0	4396874..4397419	+	181	74314476	nusG	SSON_4155	-	transcription antitermination protein NusG
3859	 51.98	0	4397578..4398006	+	142	74314477	rplK	SSON_4156	-	50S ribosomal protein L11
3860	 51.77	0	4398010..4398714	+	234	74314478	rplA	SSON_4157	-	50S ribosomal protein L1
3861	 52.21	0	4399127..4399624	+	165	74314479	rplJ	SSON_4158	-	50S ribosomal protein L10
3862	 46.17	-1	4399691..4400056	+	121	74314480	rplL	SSON_4159	-	50S ribosomal protein L7/L12
3863	 52.69	0	4400376..4404404	+	1342	74314481	rpoB	SSON_4160	-	DNA-directed RNA polymerase subunit beta
3864	 53.91	0	4404481..4408704	+	1407	74314482	rpoC	SSON_4161	-	DNA-directed RNA polymerase subunit beta'
3865	 54.94	0	4408946..4410079	-	377	74314483	thiH	SSON_4162	-	thiamine biosynthesis protein ThiH
3866	 57.98	+1	4410076..4410846	-	256	161986398	thiG	SSON_4163	-	thiazole synthase
3867	 55.22	0	4410848..4411048	-	66	74314485	thiS	SSON_4164	-	sulfur carrier protein ThiS
3868	 56.75	+1	4411032..4411787	-	251	161986397	thiF	SSON_4165	-	hypothetical protein
3869	 58.02	+1	4411780..4412415	-	211