IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3847	 52.48	0	4380452..4381156	+	234	74314465	yijC	SSON_4136	-	DNA-binding transcriptional repressor FabR
3848	 49.17	0	4381156..4381515	+	119	74314466	yijD	SSON_4137	-	hypothetical protein
3849	 50.95	0	4381555..4382655	-	366	74314467	trmA	SSON_4138	-	tRNA (uracil-5-)-methyltransferase
3850	 50.14	0	4383024..4384868	+	614	74314468	btuB	SSON_4139	-	vitamin B12/cobalamin outer membrane transporter
3851	 51.40	0	4384813..4385670	+	285	161986399	murI	SSON_4140	-	glutamate racemase
3852	 46.36	-1	4391188..4392216	+	342	74314470	murB	SSON_4145	-	UDP-N-acetylenolpyruvoylglucosamine reductase
3853	 49.69	0	4392213..4393178	+	321	74314471	birA	SSON_4146	-	biotin--protein ligase
3854	 44.37	-1	4393207..4394157	-	316	74314472	coaA	SSON_4147	-	pantothenate kinase
3855	 39.74	-2	4394344..4394499	-	51	74314473	-	SSON_4148	-	hypothetical protein
3856	 53.16	0	4395075..4396259	+	394	74314474	tufB	SSON_4153	-	elongation factor Tu
3857	 55.21	0	4396489..4396872	+	127	74314475	secE	SSON_4154	-	preprotein translocase subunit SecE
3858	 51.47	0	4396874..4397419	+	181	74314476	nusG	SSON_4155	-	transcription antitermination protein NusG
3859	 51.98	0	4397578..4398006	+	142	74314477	rplK	SSON_4156	-	50S ribosomal protein L11
3860	 51.77	0	4398010..4398714	+	234	74314478	rplA	SSON_4157	-	50S ribosomal protein L1
3861	 52.21	0	4399127..4399624	+	165	74314479	rplJ	SSON_4158	-	50S ribosomal protein L10
3862	 46.17	-1	4399691..4400056	+	121