IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3840	 55.54	0	4370088..4372739	-	883	74314458	ppc	SSON_4129	-	phosphoenolpyruvate carboxylase
3841	 51.30	0	4373091..4374242	-	383	74314459	argE	SSON_4130	-	acetylornithine deacetylase
3842	 53.23	0	4374396..4375400	+	334	74314460	argC	SSON_4131	-	N-acetyl-gamma-glutamyl-phosphate reductase
3843	 55.43	0	4375411..4376184	+	257	161986401	argB	SSON_4132	-	acetylglutamate kinase
3844	 56.91	+1	4376245..4377618	+	457	74314462	argH	SSON_4133	-	argininosuccinate lyase
3845	 55.56	0	4377885..4378802	+	305	74314463	oxyR	SSON_4134	-	DNA-binding transcriptional regulator OxyR
3846	 51.96	0	4378785..4380185	-	466	161986400	udhA	SSON_4135	-	soluble pyridine nucleotide transhydrogenase
3847	 52.48	0	4380452..4381156	+	234	74314465	yijC	SSON_4136	-	DNA-binding transcriptional repressor FabR
3848	 49.17	0	4381156..4381515	+	119	74314466	yijD	SSON_4137	-	hypothetical protein
3849	 50.95	0	4381555..4382655	-	366	74314467	trmA	SSON_4138	-	tRNA (uracil-5-)-methyltransferase
3850	 50.14	0	4383024..4384868	+	614	74314468	btuB	SSON_4139	-	vitamin B12/cobalamin outer membrane transporter
3851	 51.40	0	4384813..4385670	+	285	161986399	murI	SSON_4140	-	glutamate racemase
3852	 46.36	-1	4391188..4392216	+	342	74314470	murB	SSON_4145	-	UDP-N-acetylenolpyruvoylglucosamine reductase
3853	 49.69	0	4392213..4393178	+	321	74314471	birA	SSON_4146	-	biotin--protein ligase
3854	 44.37	-1	4393207..4394157	-	316	74314472	coaA	SSON_4147	-	pantothenate kinase