IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3827	 58.20	+1	4349476..4351908	+	810	74314445	metL	SSON_4114	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
3828	 51.85	0	4352257..4353147	+	296	74314446	metF	SSON_4115	-	5,10-methylenetetrahydrofolate reductase
3829	 56.17	+1	4353476..4355656	+	726	74314447	katG	SSON_4116	-	catalase
3830	 53.99	0	4355717..4356655	+	312	74314448	yijE	SSON_4117	-	hypothetical protein
3831	 52.75	0	4356682..4357299	-	205	74314449	yijF	SSON_4118	-	hypothetical protein
3832	 54.53	0	4357573..4358676	-	367	161986402	gldA	SSON_4119	-	glycerol dehydrogenase
3833	 54.30	0	4358687..4359349	-	220	74314451	talC	SSON_4120	-	fructose-6-phosphate aldolase
3834	 54.96	0	4359361..4361496	-	711	74314452	ptsA	SSON_4121	-	PEP-protein phosphotransferase system enzyme I
3835	 53.80	0	4362171..4363250	+	359	74314453	frwC	SSON_4122	-	putative fructose-like permease EIIC subunit 2
3836	 54.72	0	4365898..4366776	+	292	74314454	pflC	SSON_4125	-	pyruvate formate lyase II activase
3837	 56.43	+1	4366778..4367119	+	113	74314455	frwD	SSON_4126	-	putative fructose-like phosphotransferase EIIB subunit 3
3838	 53.05	0	4367106..4367957	-	283	74314456	yijO	SSON_4127	-	putative ARAC-type regulatory protein
3839	 50.58	0	4368172..4369905	-	577	74314457	yijP	SSON_4128	-	hypothetical protein
3840	 55.54	0	4370088..4372739	-	883	74314458	ppc	SSON_4129	-	phosphoenolpyruvate carboxylase
3841	 51.30	0	4373091..4374242	-	383	74314459	argE	SSON_4130	-	acetylornithine