IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3820	 60.71	+2	4342300..4342635	+	111	74314438	-	SSON_4107	-	hypothetical protein
3821	 53.03	0	4342722..4343894	+	390	74314439	-	SSON_4108	-	IS21 ORF1
3822	 52.63	0	4343894..4344691	+	265	74314440	-	SSON_4109	-	IS21 ORF2
3823	 44.30	-1	4344785..4345696	+	303	74314441	-	SSON_4110	-	hypothetical protein
3824	 52.55	0	4346927..4347535	-	202	74314442	yiiX	SSON_4111	-	putative peptidoglycan peptidase
3825	 51.89	0	4347719..4348036	-	105	74314443	metJ	SSON_4112	-	transcriptional repressor protein MetJ
3826	 54.95	0	4348313..4349473	+	386	74314444	metB	SSON_4113	-	cystathionine gamma-synthase
3827	 58.20	+1	4349476..4351908	+	810	74314445	metL	SSON_4114	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
3828	 51.85	0	4352257..4353147	+	296	74314446	metF	SSON_4115	-	5,10-methylenetetrahydrofolate reductase
3829	 56.17	+1	4353476..4355656	+	726	74314447	katG	SSON_4116	-	catalase
3830	 53.99	0	4355717..4356655	+	312	74314448	yijE	SSON_4117	-	hypothetical protein
3831	 52.75	0	4356682..4357299	-	205	74314449	yijF	SSON_4118	-	hypothetical protein
3832	 54.53	0	4357573..4358676	-	367	161986402	gldA	SSON_4119	-	glycerol dehydrogenase
3833	 54.30	0	4358687..4359349	-	220	74314451	talC	SSON_4120	-	fructose-6-phosphate aldolase
3834	 54.96	0	4359361..4361496	-	711	74314452	ptsA	SSON_4121	-	PEP-protein phosphotransferase system enzyme I
3835	 53.80	0	4362171..4363250	+	359