IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3813	 52.55	0	4334456..4335787	-	443	74314431	hslU	SSON_4100	-	ATP-dependent protease ATP-binding subunit
3814	 52.73	0	4335797..4336327	-	176	74314432	hslV	SSON_4101	-	ATP-dependent protease peptidase subunit
3815	 57.92	+1	4336420..4337379	-	319	74314433	ftsN	SSON_4102	-	essential cell division protein
3816	 52.05	0	4337471..4338496	-	341	74314434	cytR	SSON_4103	-	DNA-binding transcriptional regulator CytR
3817	 57.57	+1	4338652..4340850	-	732	74314435	priA	SSON_4104	-	primosome assembly protein PriA
3818	 49.30	0	4341053..4341265	+	70	74314436	rpmE	SSON_4105	-	50S ribosomal protein L31
3819	 65.54	+2	4341425..4342309	+	294	74314437	-	SSON_4106	-	hypothetical protein
3820	 60.71	+2	4342300..4342635	+	111	74314438	-	SSON_4107	-	hypothetical protein
3821	 53.03	0	4342722..4343894	+	390	74314439	-	SSON_4108	-	IS21 ORF1
3822	 52.63	0	4343894..4344691	+	265	74314440	-	SSON_4109	-	IS21 ORF2
3823	 44.30	-1	4344785..4345696	+	303	74314441	-	SSON_4110	-	hypothetical protein
3824	 52.55	0	4346927..4347535	-	202	74314442	yiiX	SSON_4111	-	putative peptidoglycan peptidase
3825	 51.89	0	4347719..4348036	-	105	74314443	metJ	SSON_4112	-	transcriptional repressor protein MetJ
3826	 54.95	0	4348313..4349473	+	386	74314444	metB	SSON_4113	-	cystathionine gamma-synthase
3827	 58.20	+1	4349476..4351908	+	810	74314445	metL	SSON_4114	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
3828	 51.85	0	4352257..4353147	+	296