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Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3810 48.37 0 4332555..4332800 + 81 74314428 yiiU SSON_4097 - hypothetical protein 3811 51.65 0 4332885..4333370 - 161 74314429 menG SSON_4098 - ribonuclease activity regulator protein RraA 3812 53.40 0 4333463..4334389 - 308 74314430 menA SSON_4099 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase 3813 52.55 0 4334456..4335787 - 443 74314431 hslU SSON_4100 - ATP-dependent protease ATP-binding subunit 3814 52.73 0 4335797..4336327 - 176 74314432 hslV SSON_4101 - ATP-dependent protease peptidase subunit 3815 57.92 +1 4336420..4337379 - 319 74314433 ftsN SSON_4102 - essential cell division protein 3816 52.05 0 4337471..4338496 - 341 74314434 cytR SSON_4103 - DNA-binding transcriptional regulator CytR 3817 57.57 +1 4338652..4340850 - 732 74314435 priA SSON_4104 - primosome assembly protein PriA 3818 49.30 0 4341053..4341265 + 70 74314436 rpmE SSON_4105 - 50S ribosomal protein L31 3819 65.54 +2 4341425..4342309 + 294 74314437 - SSON_4106 - hypothetical protein 3820 60.71 +2 4342300..4342635 + 111 74314438 - SSON_4107 - hypothetical protein 3821 53.03 0 4342722..4343894 + 390 74314439 - SSON_4108 - IS21 ORF1 3822 52.63 0 4343894..4344691 + 265 74314440 - SSON_4109 - IS21 ORF2 3823 44.30 -1 4344785..4345696 + 303 74314441 - SSON_4110 - hypothetical protein 3824 52.55 0 4346927..4347535 - 202 74314442 yiiX SSON_4111 - putative peptidoglycan peptidase 3825 51.89 0 4347719..4348036 - 105 74314443 metJ SSON_4112 - transcriptional repressor protein MetJ 3826 54.95 0 4348313..4349473 + 386 74314444 metB SSON_4113 - cystathionine gamma-synthase 3827 58.20 +1 4349476..4351908 + 810 74314445 metL SSON_4114 - bifunctional aspartate kinase II/homoserine dehydrogenase II 3828 51.85 0 4352257..4353147 + 296 74314446 metF SSON_4115 - 5,10-methylenetetrahydrofolate reductase 3829 56.17 +1 4353476..4355656 + 726 74314447 katG SSON_4116 - catalase 3830 53.99 0 4355717..4356655 + 312 74314448 yijE SSON_4117 - hypothetical protein 3831 52.75 0 4356682..4357299 - 205 74314449 yijF SSON_4118 - hypothetical protein 3832 54.53 0 4357573..4358676 - 367 161986402 gldA SSON_4119 - glycerol dehydrogenase 3833 54.30 0 4358687..4359349 - 220 74314451 talC SSON_4120 - fructose-6-phosphate aldolase 3834 54.96 0 4359361..4361496 - 711 74314452 ptsA SSON_4121 - PEP-protein phosphotransferase system enzyme I 3835 53.80 0 4362171..4363250 + 359 74314453 frwC SSON_4122 - putative fructose-like permease EIIC subunit 2 3836 54.72 0 4365898..4366776 + 292 74314454 pflC SSON_4125 - pyruvate formate lyase II activase 3837 56.43 +1 4366778..4367119 + 113 74314455 frwD SSON_4126 - putative fructose-like phosphotransferase EIIB subunit 3 3838 53.05 0 4367106..4367957 - 283 74314456 yijO SSON_4127 - putative ARAC-type regulatory protein 3839 50.58 0 4368172..4369905 - 577 74314457 yijP SSON_4128 - hypothetical protein 3840 55.54 0 4370088..4372739 - 883 74314458 ppc SSON_4129 - phosphoenolpyruvate carboxylase 3841 51.30 0 4373091..4374242 - 383 74314459 argE SSON_4130 - acetylornithine deacetylase 3842 53.23 0 4374396..4375400 + 334 74314460 argC SSON_4131 - N-acetyl-gamma-glutamyl-phosphate reductase 3843 55.43 0 4375411..4376184 + 257 161986401 argB SSON_4132 - acetylglutamate kinase 3844 56.91 +1 4376245..4377618 + 457 74314462 argH SSON_4133 - argininosuccinate lyase 3845 55.56 0 4377885..4378802 + 305 74314463 oxyR SSON_4134 - DNA-binding transcriptional regulator OxyR 3846 51.96 0 4378785..4380185 - 466 161986400 udhA SSON_4135 - soluble pyridine nucleotide transhydrogenase 3847 52.48 0 4380452..4381156 + 234 74314465 yijC SSON_4136 - DNA-binding transcriptional repressor FabR 3848 49.17 0 4381156..4381515 + 119 74314466 yijD SSON_4137 - hypothetical protein 3849 50.95 0 4381555..4382655 - 366 74314467 trmA SSON_4138 - tRNA (uracil-5-)-methyltransferase 3850 50.14 0 4383024..4384868 + 614 74314468 btuB SSON_4139 - vitamin B12/cobalamin outer membrane transporter 3851 51.40 0 4384813..4385670 + 285 161986399 murI SSON_4140 - glutamate racemase 3852 46.36 -1 4391188..4392216 + 342 74314470 murB SSON_4145 - UDP-N-acetylenolpyruvoylglucosamine reductase 3853 49.69 0 4392213..4393178 + 321 74314471 birA SSON_4146 - biotin--protein ligase 3854 44.37 -1 4393207..4394157 - 316 74314472 coaA SSON_4147 - pantothenate kinase 3855 39.74 -2 4394344..4394499 - 51 74314473 - SSON_4148 - hypothetical protein 3856 53.16 0 4395075..4396259 + 394 74314474 tufB SSON_4153 - elongation factor Tu 3857 55.21 0 4396489..4396872 + 127 74314475 secE SSON_4154 - preprotein translocase subunit SecE 3858 51.47 0 4396874..4397419 + 181 74314476 nusG SSON_4155 - transcription antitermination protein NusG 3859 51.98 0 4397578..4398006 + 142 74314477 rplK SSON_4156 - 50S ribosomal protein L11 3860 51.77 0 4398010..4398714 + 234 74314478 rplA SSON_4157 - 50S ribosomal protein L1 3861 52.21 0 4399127..4399624 + 165 74314479 rplJ SSON_4158 - 50S ribosomal protein L10 3862 46.17 -1 4399691..4400056 + 121 74314480 rplL SSON_4159 - 50S ribosomal protein L7/L12 3863 52.69 0 4400376..4404404 + 1342 74314481 rpoB SSON_4160 - DNA-directed RNA polymerase subunit beta 3864 53.91 0 4404481..4408704 + 1407 74314482 rpoC SSON_4161 - DNA-directed RNA polymerase subunit beta' 3865 54.94 0 4408946..4410079 - 377 74314483 thiH SSON_4162 - thiamine biosynthesis protein ThiH 3866 57.98 +1 4410076..4410846 - 256 161986398 thiG SSON_4163 - thiazole synthase 3867 55.22 0 4410848..4411048 - 66 74314485 thiS SSON_4164 - sulfur carrier protein ThiS 3868 56.75 +1 4411032..4411787 - 251 161986397 thiF SSON_4165 - hypothetical protein 3869 58.02 +1 4411780..4412415 - 211 74314487 thiE SSON_4166 - thiamine-phosphate pyrophosphorylase 3870 55.75 0 4412415..4414310 - 631 74314488 thiC SSON_4167 - thiamine biosynthesis protein ThiC 3871 49.48 0 4414544..4415020 - 158 74314489 yjaE SSON_4168 - anti-RNA polymerase sigma 70 factor 3872 53.10 0 4415115..4415888 + 257 74314490 nudC SSON_4169 - NADH pyrophosphatase 3873 55.87 +1 4415928..4416992 + 354 74314491 hemE SSON_4170 - uroporphyrinogen decarboxylase 3874 58.48 +1 4417002..4417673 + 223 161986396 nfi SSON_4171 - endonuclease V 3875 48.39 0 4417716..4418306 + 196 74314493 yjaG SSON_4172 - hypothetical protein 3876 47.99 0 4418493..4418765 + 90 74314494 hupA SSON_4173 - transcriptional regulator HU subunit alpha 3877 53.45 0 4418778..4419473 + 231 74314495 yjaH SSON_4174 - hypothetical protein 3878 53.52 0 4419475..4419900 - 141 161986395 zraP SSON_4175 - zinc resistance protein 3879 54.76 0 4420138..4421514 + 458 74314497 hydH SSON_4176 - sensor protein ZraS 3880 56.71 +1 4421511..4422836 + 441 74314498 hydG SSON_4177 - transcriptional regulatory protein ZraR 3881 58.22 +1 4422833..4424122 - 429 74314499 purD SSON_4178 - phosphoribosylamine--glycine ligase 3882 56.16 +1 4424134..4425723 - 529 74314500 purH SSON_4179 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3883 53.15 0 4431465..4431908 - 147 74314501 yjaB SSON_4184 - hypothetical protein 3884 50.54 0 4432065..4432994 + 309 74314502 metA SSON_4185 - homoserine O-succinyltransferase 3885 51.91 0 4433263..4434705 + 480 74314503 aceB SSON_4186 - malate synthase 3886 55.44 0 4434894..4436006 + 370 74314504 aceA SSON_4187 - isocitrate lyase 3887 54.17 0 4436210..4436713 - 167 74314505 - SSON_4188 - IS1 ORF 3888 53.94 0 4438274..4439098 - 274 161986394 iclR SSON_4189 - transcriptional repressor IclR 3889 55.89 +1 4439298..4442981 + 1227 74314507 metH SSON_4190 - B12-dependent methionine synthase 3890 55.39 0 4443201..4444832 + 543 74314508 yjbB SSON_4191 - putative alpha helix protein 3891 54.93 0 4444923..4445612 - 229 74314509 pepE SSON_4192 - peptidase E 3892 53.67 0 4445995..4447110 - 371 74314510 sorE SSON_4193 - putative L-sorbose-1-P-reductase 3893 54.67 0 4447275..4448099 - 274 74314511 sorM SSON_4194 - putative sorbose-permease PTS system IID component 3894 53.13 0 4448110..4448907 - 265 74314512 sorA SSON_4195 - putative sorbose-permease PTS system IIC component 3895 52.45 0 4449467..4449874 - 135 74314513 sorF SSON_4197 - putative sorbose-permease PTS system IIA component 3896 51.43 0 4449884..4450690 - 268 74314514 sorD SSON_4198 - sorbitol-6-phosphate 2-dehydrogenase 3897 51.89 0 4451945..4452817 + 290 74314515 yjbC SSON_4200 - 23S rRNA pseudouridine synthase F 3898 50.18 0 4452950..4453222 - 90 74314516 yjbD SSON_4201 - hypothetical protein 3899 54.15 0 4453474..4454823 - 449 74314517 lysC SSON_4202 - aspartate kinase III 3900 51.70 0 4455348..4456997 + 549 74314518 pgi SSON_4203 - glucose-6-phosphate isomerase 3901 60.08 +2 4457459..4457701 + 80 74314519 yjbE SSON_4204 - hypothetical protein 3902 54.26 0 4457785..4458453 + 222 74314520 yjbF SSON_4205 - hypothetical protein 3903 57.99 +1 4458450..4459187 + 245 74314521 yjbG SSON_4206 - hypothetical protein 3904 54.17 0 4459187..4461283 + 698 74314522 yjbH SSON_4207 - hypothetical protein 3905 48.91 0 4461878..4462288 + 136 74314523 yjbA SSON_4208 - phosphate-starvation-inducible protein PsiE 3906 48.98 0 4462332..4463807 - 491 74314524 xylE SSON_4209 - D-xylose transporter XylE 3907 54.55 0 4464179..4465069 - 296 74314525 malG SSON_4210 - maltose transporter permease 3908 52.56 0 4465084..4466628 - 514 74314526 malF SSON_4211 - maltose transporter membrane protein 3909 50.97 0 4466782..4467972 - 396 74314527 malE SSON_4212 - maltose ABC transporter periplasmic protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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