IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3804	 46.67	-1	4327008..4327307	+	99	74314422	yiiS	SSON_4091	-	hypothetical protein
3805	 43.36	-1	4327334..4327762	+	142	74314423	yiiT	SSON_4092	-	universal stress protein UspD
3806	 53.41	0	4327767..4328513	-	248	74314424	fpr	SSON_4093	-	ferredoxin-NADP reductase
3807	 56.28	+1	4328610..4329620	-	336	74314425	glpX	SSON_4094	-	fructose 1,6-bisphosphatase II
3808	 54.08	0	4329750..4331282	-	510	74314426	glpK	SSON_4095	-	glycerol kinase
3809	 50.83	0	4331284..4332129	-	281	74314427	glpF	SSON_4096	-	facilitated diffusion of glycerol
3810	 48.37	0	4332555..4332800	+	81	74314428	yiiU	SSON_4097	-	hypothetical protein
3811	 51.65	0	4332885..4333370	-	161	74314429	menG	SSON_4098	-	ribonuclease activity regulator protein RraA
3812	 53.40	0	4333463..4334389	-	308	74314430	menA	SSON_4099	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3813	 52.55	0	4334456..4335787	-	443	74314431	hslU	SSON_4100	-	ATP-dependent protease ATP-binding subunit
3814	 52.73	0	4335797..4336327	-	176	74314432	hslV	SSON_4101	-	ATP-dependent protease peptidase subunit
3815	 57.92	+1	4336420..4337379	-	319	74314433	ftsN	SSON_4102	-	essential cell division protein
3816	 52.05	0	4337471..4338496	-	341	74314434	cytR	SSON_4103	-	DNA-binding transcriptional regulator CytR
3817	 57.57	+1	4338652..4340850	-	732	74314435	priA	SSON_4104	-	primosome assembly protein PriA
3818	 49.30	0	4341053..4341265	+	70	74314436	rpmE	SSON_4105	-	50S ribosomal protein L31
3819	 65.54