IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3785	 51.43	0	4307375..4307689	-	104	74314403	yiiL	SSON_4071	-	hypothetical protein
3786	 54.91	0	4307699..4308523	-	274	74314404	rhaD	SSON_4072	-	rhamnulose-1-phosphate aldolase
3787	 56.19	+1	4308765..4310024	-	419	74314405	rhaA	SSON_4073	-	L-rhamnose isomerase
3788	 55.58	0	4310021..4311490	-	489	74314406	rhaB	SSON_4074	-	rhamnulokinase
3789	 51.97	0	4311778..4312614	+	278	74314407	rhaS	SSON_4075	-	transcriptional activator RhaS
3790	 51.59	0	4313533..4314567	-	344	74314408	rhaT	SSON_4077	-	rhamnose-proton symporter
3791	 53.46	0	4314852..4315472	+	206	74314409	sodA	SSON_4078	-	superoxide dismutase
3792	 52.64	0	4315732..4316715	+	327	161986405	kdgT	SSON_4079	-	2-keto-3-deoxygluconate permease
3793	 53.48	0	4316864..4317538	+	224	161986404	yiiM	SSON_4080	-	hypothetical protein
3794	 54.66	0	4317644..4319017	-	457	74314412	cpxA	SSON_4081	-	two-component sensor protein
3795	 51.36	0	4319014..4319712	-	232	74314413	cpxR	SSON_4082	-	DNA-binding transcriptional regulator CpxR
3796	 50.10	0	4319862..4320362	+	166	161986403	cpxP	SSON_4083	-	periplasmic repressor CpxP
3797	 52.49	0	4320510..4321412	+	300	74314415	fieF	SSON_4084	-	ferrous iron efflux protein F
3798	 53.69	0	4321593..4322555	+	320	74314416	pfkA	SSON_4085	-	6-phosphofructokinase
3799	 50.91	0	4322875..4323864	+	329	74314417	sbp	SSON_4086	-	sulfate transporter subunit
3800	 48.41	0	4323971..4324726	+	251