IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3776	 52.52	0	4294715..4295350	-	211	74314394	fdoI	SSON_4061	-	formate dehydrogenase-O subunit gamma
3777	 55.81	0	4295347..4296249	-	300	74314395	fdoH	SSON_4062	-	formate dehydrogenase-O, iron-sulfur subunit
3778	 55.20	0	4296262..4299312	-	1016	74314396	fdoG	SSON_4063	-	formate dehydrogenase-O, major subunit
3779	 53.00	0	4299506..4300339	+	277	74314397	fdhD	SSON_4064	-	formate dehydrogenase accessory protein
3780	 54.37	0	4301497..4302000	+	167	74314398	-	SSON_4066	-	IS1 ORF
3781	 49.86	0	4302358..4304106	-	582	74314399	frvR	SSON_4067	-	putative frv operon regulatory protein
3782	 52.75	0	4304106..4305176	-	356	74314400	frvX	SSON_4068	-	putative fructose-specific phosphotransferase system protein FrvX
3783	 55.76	0	4305166..4306623	-	485	74314401	frvB	SSON_4069	-	putative PTS transporter components IIBC
3784	 50.78	0	4306628..4307074	-	148	74314402	frvA	SSON_4070	-	putative fructose-like phosphotransferase system subunit EIIA
3785	 51.43	0	4307375..4307689	-	104	74314403	yiiL	SSON_4071	-	hypothetical protein
3786	 54.91	0	4307699..4308523	-	274	74314404	rhaD	SSON_4072	-	rhamnulose-1-phosphate aldolase
3787	 56.19	+1	4308765..4310024	-	419	74314405	rhaA	SSON_4073	-	L-rhamnose isomerase
3788	 55.58	0	4310021..4311490	-	489	74314406	rhaB	SSON_4074	-	rhamnulokinase
3789	 51.97	0	4311778..4312614	+	278	74314407	rhaS	SSON_4075	-	transcriptional activator RhaS
3790	 51.59	0	4313533..4314567	-	344	74314408	rhaT	SSON_4077	-	rhamn