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Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3763 51.76 0 4281898..4282776 + 292 74314381 yihU SSON_4048 - putative dehydrogenase 3764 51.46 0 4282801..4283688 + 295 74314382 yihT SSON_4049 - putative aldolase 3765 52.72 0 4283721..4284731 + 336 74314383 rspB SSON_4050 - putative dehydrogenase 3766 49.72 0 4284801..4286234 + 477 74314384 - SSON_4051 - putative transporter 3767 46.59 -1 4286333..4287682 + 449 74314385 shiA SSON_4052 - putative transport protein shikimate 3768 49.77 0 4287672..4288559 + 295 74314386 - SSON_4053 - hypothetical protein 3769 50.67 0 4288700..4289299 + 199 161986406 yihX SSON_4054 - phosphatase 3770 50.74 0 4289293..4290165 + 290 74314388 rbn SSON_4055 - ribonuclease BN 3771 55.25 0 4290162..4290599 + 145 74314389 yihZ SSON_4056 - D-tyrosyl-tRNA deacylase 3772 54.65 0 4290596..4291585 + 329 74314390 yiiD SSON_4057 - putative acetyltransferase 3773 54.37 0 4291647..4292150 - 167 74314391 - SSON_4058 - IS1 ORF 3774 45.27 -1 4293217..4293459 + 80 74314392 yiiF SSON_4059 - hypothetical protein 3775 55.48 0 4293789..4294718 - 309 74314393 fdhE SSON_4060 - formate dehydrogenase accessory protein FdhE 3776 52.52 0 4294715..4295350 - 211 74314394 fdoI SSON_4061 - formate dehydrogenase-O subunit gamma 3777 55.81 0 4295347..4296249 - 300 74314395 fdoH SSON_4062 - formate dehydrogenase-O, iron-sulfur subunit 3778 55.20 0 4296262..4299312 - 1016 74314396 fdoG SSON_4063 - formate dehydrogenase-O, major subunit 3779 53.00 0 4299506..4300339 + 277 74314397 fdhD SSON_4064 - formate dehydrogenase accessory protein 3780 54.37 0 4301497..4302000 + 167 74314398 - SSON_4066 - IS1 ORF 3781 49.86 0 4302358..4304106 - 582 74314399 frvR SSON_4067 - putative frv operon regulatory protein 3782 52.75 0 4304106..4305176 - 356 74314400 frvX SSON_4068 - putative fructose-specific phosphotransferase system protein FrvX 3783 55.76 0 4305166..4306623 - 485 74314401 frvB SSON_4069 - putative PTS transporter components IIBC 3784 50.78 0 4306628..4307074 - 148 74314402 frvA SSON_4070 - putative fructose-like phosphotransferase system subunit EIIA 3785 51.43 0 4307375..4307689 - 104 74314403 yiiL SSON_4071 - hypothetical protein 3786 54.91 0 4307699..4308523 - 274 74314404 rhaD SSON_4072 - rhamnulose-1-phosphate aldolase 3787 56.19 +1 4308765..4310024 - 419 74314405 rhaA SSON_4073 - L-rhamnose isomerase 3788 55.58 0 4310021..4311490 - 489 74314406 rhaB SSON_4074 - rhamnulokinase 3789 51.97 0 4311778..4312614 + 278 74314407 rhaS SSON_4075 - transcriptional activator RhaS 3790 51.59 0 4313533..4314567 - 344 74314408 rhaT SSON_4077 - rhamnose-proton symporter 3791 53.46 0 4314852..4315472 + 206 74314409 sodA SSON_4078 - superoxide dismutase 3792 52.64 0 4315732..4316715 + 327 161986405 kdgT SSON_4079 - 2-keto-3-deoxygluconate permease 3793 53.48 0 4316864..4317538 + 224 161986404 yiiM SSON_4080 - hypothetical protein 3794 54.66 0 4317644..4319017 - 457 74314412 cpxA SSON_4081 - two-component sensor protein 3795 51.36 0 4319014..4319712 - 232 74314413 cpxR SSON_4082 - DNA-binding transcriptional regulator CpxR 3796 50.10 0 4319862..4320362 + 166 161986403 cpxP SSON_4083 - periplasmic repressor CpxP 3797 52.49 0 4320510..4321412 + 300 74314415 fieF SSON_4084 - ferrous iron efflux protein F 3798 53.69 0 4321593..4322555 + 320 74314416 pfkA SSON_4085 - 6-phosphofructokinase 3799 50.91 0 4322875..4323864 + 329 74314417 sbp SSON_4086 - sulfate transporter subunit 3800 48.41 0 4323971..4324726 + 251 74314418 cdh SSON_4087 - CDP-diacylglycerol pyrophosphatase 3801 53.12 0 4324781..4325548 - 255 74314419 tpiA SSON_4088 - triosephosphate isomerase 3802 48.67 0 4325656..4326255 - 199 74314420 yiiQ SSON_4089 - hypothetical protein 3803 48.75 0 4326356..4326796 + 146 74314421 yiiR SSON_4090 - hypothetical protein 3804 46.67 -1 4327008..4327307 + 99 74314422 yiiS SSON_4091 - hypothetical protein 3805 43.36 -1 4327334..4327762 + 142 74314423 yiiT SSON_4092 - universal stress protein UspD 3806 53.41 0 4327767..4328513 - 248 74314424 fpr SSON_4093 - ferredoxin-NADP reductase 3807 56.28 +1 4328610..4329620 - 336 74314425 glpX SSON_4094 - fructose 1,6-bisphosphatase II 3808 54.08 0 4329750..4331282 - 510 74314426 glpK SSON_4095 - glycerol kinase 3809 50.83 0 4331284..4332129 - 281 74314427 glpF SSON_4096 - facilitated diffusion of glycerol 3810 48.37 0 4332555..4332800 + 81 74314428 yiiU SSON_4097 - hypothetical protein 3811 51.65 0 4332885..4333370 - 161 74314429 menG SSON_4098 - ribonuclease activity regulator protein RraA 3812 53.40 0 4333463..4334389 - 308 74314430 menA SSON_4099 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase 3813 52.55 0 4334456..4335787 - 443 74314431 hslU SSON_4100 - ATP-dependent protease ATP-binding subunit 3814 52.73 0 4335797..4336327 - 176 74314432 hslV SSON_4101 - ATP-dependent protease peptidase subunit 3815 57.92 +1 4336420..4337379 - 319 74314433 ftsN SSON_4102 - essential cell division protein 3816 52.05 0 4337471..4338496 - 341 74314434 cytR SSON_4103 - DNA-binding transcriptional regulator CytR 3817 57.57 +1 4338652..4340850 - 732 74314435 priA SSON_4104 - primosome assembly protein PriA 3818 49.30 0 4341053..4341265 + 70 74314436 rpmE SSON_4105 - 50S ribosomal protein L31 3819 65.54 +2 4341425..4342309 + 294 74314437 - SSON_4106 - hypothetical protein 3820 60.71 +2 4342300..4342635 + 111 74314438 - SSON_4107 - hypothetical protein 3821 53.03 0 4342722..4343894 + 390 74314439 - SSON_4108 - IS21 ORF1 3822 52.63 0 4343894..4344691 + 265 74314440 - SSON_4109 - IS21 ORF2 3823 44.30 -1 4344785..4345696 + 303 74314441 - SSON_4110 - hypothetical protein 3824 52.55 0 4346927..4347535 - 202 74314442 yiiX SSON_4111 - putative peptidoglycan peptidase 3825 51.89 0 4347719..4348036 - 105 74314443 metJ SSON_4112 - transcriptional repressor protein MetJ 3826 54.95 0 4348313..4349473 + 386 74314444 metB SSON_4113 - cystathionine gamma-synthase 3827 58.20 +1 4349476..4351908 + 810 74314445 metL SSON_4114 - bifunctional aspartate kinase II/homoserine dehydrogenase II 3828 51.85 0 4352257..4353147 + 296 74314446 metF SSON_4115 - 5,10-methylenetetrahydrofolate reductase 3829 56.17 +1 4353476..4355656 + 726 74314447 katG SSON_4116 - catalase 3830 53.99 0 4355717..4356655 + 312 74314448 yijE SSON_4117 - hypothetical protein 3831 52.75 0 4356682..4357299 - 205 74314449 yijF SSON_4118 - hypothetical protein 3832 54.53 0 4357573..4358676 - 367 161986402 gldA SSON_4119 - glycerol dehydrogenase 3833 54.30 0 4358687..4359349 - 220 74314451 talC SSON_4120 - fructose-6-phosphate aldolase 3834 54.96 0 4359361..4361496 - 711 74314452 ptsA SSON_4121 - PEP-protein phosphotransferase system enzyme I 3835 53.80 0 4362171..4363250 + 359 74314453 frwC SSON_4122 - putative fructose-like permease EIIC subunit 2 3836 54.72 0 4365898..4366776 + 292 74314454 pflC SSON_4125 - pyruvate formate lyase II activase 3837 56.43 +1 4366778..4367119 + 113 74314455 frwD SSON_4126 - putative fructose-like phosphotransferase EIIB subunit 3 3838 53.05 0 4367106..4367957 - 283 74314456 yijO SSON_4127 - putative ARAC-type regulatory protein 3839 50.58 0 4368172..4369905 - 577 74314457 yijP SSON_4128 - hypothetical protein 3840 55.54 0 4370088..4372739 - 883 74314458 ppc SSON_4129 - phosphoenolpyruvate carboxylase 3841 51.30 0 4373091..4374242 - 383 74314459 argE SSON_4130 - acetylornithine deacetylase 3842 53.23 0 4374396..4375400 + 334 74314460 argC SSON_4131 - N-acetyl-gamma-glutamyl-phosphate reductase 3843 55.43 0 4375411..4376184 + 257 161986401 argB SSON_4132 - acetylglutamate kinase 3844 56.91 +1 4376245..4377618 + 457 74314462 argH SSON_4133 - argininosuccinate lyase 3845 55.56 0 4377885..4378802 + 305 74314463 oxyR SSON_4134 - DNA-binding transcriptional regulator OxyR 3846 51.96 0 4378785..4380185 - 466 161986400 udhA SSON_4135 - soluble pyridine nucleotide transhydrogenase 3847 52.48 0 4380452..4381156 + 234 74314465 yijC SSON_4136 - DNA-binding transcriptional repressor FabR 3848 49.17 0 4381156..4381515 + 119 74314466 yijD SSON_4137 - hypothetical protein 3849 50.95 0 4381555..4382655 - 366 74314467 trmA SSON_4138 - tRNA (uracil-5-)-methyltransferase 3850 50.14 0 4383024..4384868 + 614 74314468 btuB SSON_4139 - vitamin B12/cobalamin outer membrane transporter 3851 51.40 0 4384813..4385670 + 285 161986399 murI SSON_4140 - glutamate racemase 3852 46.36 -1 4391188..4392216 + 342 74314470 murB SSON_4145 - UDP-N-acetylenolpyruvoylglucosamine reductase 3853 49.69 0 4392213..4393178 + 321 74314471 birA SSON_4146 - biotin--protein ligase 3854 44.37 -1 4393207..4394157 - 316 74314472 coaA SSON_4147 - pantothenate kinase 3855 39.74 -2 4394344..4394499 - 51 74314473 - SSON_4148 - hypothetical protein 3856 53.16 0 4395075..4396259 + 394 74314474 tufB SSON_4153 - elongation factor Tu 3857 55.21 0 4396489..4396872 + 127 74314475 secE SSON_4154 - preprotein translocase subunit SecE 3858 51.47 0 4396874..4397419 + 181 74314476 nusG SSON_4155 - transcription antitermination protein NusG 3859 51.98 0 4397578..4398006 + 142 74314477 rplK SSON_4156 - 50S ribosomal protein L11 3860 51.77 0 4398010..4398714 + 234 74314478 rplA SSON_4157 - 50S ribosomal protein L1 3861 52.21 0 4399127..4399624 + 165 74314479 rplJ SSON_4158 - 50S ribosomal protein L10 3862 46.17 -1 4399691..4400056 + 121 74314480 rplL SSON_4159 - 50S ribosomal protein L7/L12 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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