IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3748	 47.85	0	4260410..4261036	+	208	74314366	dsbA	SSON_4032	-	periplasmic protein disulfide isomerase I
3749	 54.37	0	4261063..4261566	-	167	74314367	-	SSON_4033	-	IS1 ORF
3750	 45.34	-1	4262609..4263541	-	310	74314368	yihG	SSON_4035	-	putative endonuclease
3751	 52.21	0	4263905..4266691	+	928	74314369	polA	SSON_4036	-	DNA polymerase I
3752	 51.66	0	4267073..4267705	-	210	161986408	yihA	SSON_4037	-	GTPase EngB
3753	 52.55	0	4268287..4268796	+	169	74314371	yihI	SSON_4038	-	hypothetical protein
3754	 53.06	0	4268985..4270358	+	457	161986407	hemN	SSON_4039	-	coproporphyrinogen III oxidase
3755	 56.60	+1	4270770..4272179	-	469	74314373	glnG	SSON_4040	-	nitrogen regulation protein NR(I)
3756	 55.24	0	4272191..4273240	-	349	74314374	glnL	SSON_4041	-	nitrogen regulation protein NR(II)
3757	 52.77	0	4273414..4274823	-	469	74314375	glnA	SSON_4042	-	glutamine synthetase
3758	 53.47	0	4275322..4277019	+	565	74314376	yihK	SSON_4043	-	putative GTP-binding factor
3759	 53.82	0	4277124..4278470	+	448	74314377	-	SSON_4044	-	IS4 orf
3760	 49.94	0	4278563..4279351	-	262	74314378	yihW	SSON_4045	-	putative DEOR-type transcriptional regulator
3761	 53.90	0	4279526..4280872	-	448	74314379	-	SSON_4046	-	IS4 orf
3762	 50.62	0	4280922..4281725	-	267	74314380	yihV	SSON_4047	-	putative kinase
3763	 51.76	0	4281898..4282776	+	292