IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3729	 55.78	0	4237068..4237673	+	201	74314347	yigP	SSON_4009	-	hypothetical protein
3730	 49.66	0	4237670..4239310	+	546	74314348	ubiB	SSON_4010	-	putative ubiquinone biosynthesis protein UbiB
3731	 45.19	-1	4239347..4239658	+	103	74314349	tatA	SSON_4011	-	twin argininte translocase protein A
3732	 55.43	0	4239662..4240177	+	171	161986409	-	SSON_4012	-	sec-independent translocase
3733	 51.48	0	4240180..4240956	+	258	74314351	yigU	SSON_4013	-	TatABCE protein translocation system subunit
3734	 54.34	0	4240986..4241780	+	264	74314352	tatD	SSON_4014	-	DNase TatD
3735	 49.28	0	4241777..4242265	-	162	74314353	rfaH	SSON_4015	-	transcriptional activator RfaH
3736	 53.95	0	4242432..4243925	+	497	74314354	yigC	SSON_4016	-	3-octaprenyl-4-hydroxybenzoate decarboxylase
3737	 51.85	0	4243972..4244673	+	233	74314355	fre	SSON_4017	-	FMN reductase
3738	 58.42	+1	4244863..4246026	-	387	74314356	fadA	SSON_4018	-	3-ketoacyl-CoA thiolase
3739	 55.30	0	4246036..4248225	-	729	74314357	fadB	SSON_4019	-	multifunctional fatty acid oxidation complex subunit alpha
3740	 53.38	0	4248415..4249746	+	443	74314358	pepQ	SSON_4020	-	proline dipeptidase
3741	 55.18	0	4249743..4250360	+	205	74314359	yigZ	SSON_4021	-	hypothetical protein
3742	 52.75	0	4250399..4251850	+	483	74314360	trkH	SSON_4022	-	potassium transporter
3743	 50.73	0	4251862..4252407	+	181	74314361	hemG	SSON_4023	-	protoporphyrinogen oxidase
3744	 48.54	0	4257898..4258410	-	170