IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3723	 55.39	0	4227142..4229403	+	753	74314341	metE	SSON_4003	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
3724	 55.08	0	4230427..4231332	+	301	161986410	-	SSON_4004	-	insertion element IS2 transposase InsD
3725	 54.35	0	4232801..4233490	-	229	74314343	ysgA	SSON_4005	-	putative hydrolase
3726	 53.81	0	4233875..4234636	+	253	74314344	udp	SSON_4006	-	uridine phosphorylase
3727	 52.80	0	4234777..4236204	+	475	74314345	yigN	SSON_4007	-	DNA recombination protein RmuC
3728	 51.98	0	4236299..4237054	+	251	74314346	ubiE	SSON_4008	-	ubiquinone/menaquinone biosynthesis methyltransferase
3729	 55.78	0	4237068..4237673	+	201	74314347	yigP	SSON_4009	-	hypothetical protein
3730	 49.66	0	4237670..4239310	+	546	74314348	ubiB	SSON_4010	-	putative ubiquinone biosynthesis protein UbiB
3731	 45.19	-1	4239347..4239658	+	103	74314349	tatA	SSON_4011	-	twin argininte translocase protein A
3732	 55.43	0	4239662..4240177	+	171	161986409	-	SSON_4012	-	sec-independent translocase
3733	 51.48	0	4240180..4240956	+	258	74314351	yigU	SSON_4013	-	TatABCE protein translocation system subunit
3734	 54.34	0	4240986..4241780	+	264	74314352	tatD	SSON_4014	-	DNase TatD
3735	 49.28	0	4241777..4242265	-	162	74314353	rfaH	SSON_4015	-	transcriptional activator RfaH
3736	 53.95	0	4242432..4243925	+	497	74314354	yigC	SSON_4016	-	3-octaprenyl-4-hydroxybenzoate decarboxylase
3737	 51.85	0	4243972..4244673	+	233	74314355	fre	SSON_4017	-	FMN re