IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3710	 51.49	0	4211621..4212259	+	212	74314328	-	SSON_3989	-	IS4 orf
3711	 52.89	0	4212978..4213928	+	316	74314329	corA	SSON_3991	-	magnesium/nickel/cobalt transporter CorA
3712	 53.97	0	4215095..4215598	-	167	74314330	-	SSON_3992	-	IS1 ORF
3713	 50.45	0	4217384..4218271	-	295	74314331	rarD	SSON_3993	-	hypothetical protein
3714	 53.42	0	4218323..4218790	-	155	161986411	yigI	SSON_3994	-	hypothetical protein
3715	 50.69	0	4218955..4219824	+	289	74314333	pldA	SSON_3995	-	phospholipase A
3716	 54.92	0	4219957..4221786	+	609	74314334	recQ	SSON_3996	-	ATP-dependent DNA helicase RecQ
3717	 52.57	0	4222099..4222467	+	122	74314335	yigJ	SSON_3997	-	hypothetical protein
3718	 50.84	0	4222529..4222945	-	138	74314336	yigK	SSON_3998	-	hypothetical protein
3719	 53.57	0	4223260..4224282	+	340	74314337	pldB	SSON_3999	-	lysophospholipase L2
3720	 51.94	0	4224290..4225090	+	266	74314338	yigL	SSON_4000	-	putative sugar phosphatase
3721	 55.33	0	4225166..4226065	+	299	74314339	yigM	SSON_4001	-	hypothetical protein
3722	 56.50	+1	4225953..4226906	-	317	74314340	metR	SSON_4002	-	regulator for metE and metH
3723	 55.39	0	4227142..4229403	+	753	74314341	metE	SSON_4003	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
3724	 55.08	0	4230427..4231332	+	301	161986410	-	SSON_4004	-	insertion element IS2 transposase InsD
3725	 54.35	0	4232801..4233490	-	229