IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3702	 52.45	0	4203744..4203947	+	67	74314320	yifL	SSON_3981	-	hypothetical protein
3703	 55.15	0	4203984..4204808	+	274	161986412	dapF	SSON_3982	-	diaminopimelate epimerase
3704	 55.93	+1	4204805..4205512	+	235	74314322	yigA	SSON_3983	-	hypothetical protein
3705	 54.40	0	4205509..4206405	+	298	74314323	xerC	SSON_3984	-	site-specific tyrosine recombinase XerC
3706	 55.23	0	4206405..4207121	+	238	74314324	yigB	SSON_3985	-	flavin mononucleotide phosphatase
3707	 57.56	+1	4207205..4209367	+	720	74314325	uvrD	SSON_3986	-	DNA-dependent helicase II
3708	 47.07	-1	4209422..4210324	-	300	74314326	-	SSON_3987	-	hypothetical protein
3709	 55.70	0	4210914..4211624	+	236	74314327	-	SSON_3988	-	IS4 orf
3710	 51.49	0	4211621..4212259	+	212	74314328	-	SSON_3989	-	IS4 orf
3711	 52.89	0	4212978..4213928	+	316	74314329	corA	SSON_3991	-	magnesium/nickel/cobalt transporter CorA
3712	 53.97	0	4215095..4215598	-	167	74314330	-	SSON_3992	-	IS1 ORF
3713	 50.45	0	4217384..4218271	-	295	74314331	rarD	SSON_3993	-	hypothetical protein
3714	 53.42	0	4218323..4218790	-	155	161986411	yigI	SSON_3994	-	hypothetical protein
3715	 50.69	0	4218955..4219824	+	289	74314333	pldA	SSON_3995	-	phospholipase A
3716	 54.92	0	4219957..4221786	+	609	74314334	recQ	SSON_3996	-	ATP-dependent DNA helicase RecQ
3717	 52.57	0	4222099..4222467	+	122