version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3699 52.10 0 4200291..4202837 + 848 74314317 cyaA SSON_3978 - adenylate cyclase 3700 53.58 0 4202877..4203197 - 106 74314319 cyaY SSON_3980 - frataxin-like protein 3701 50.00 0 4202988..4203473 + 161 74314318 - SSON_3979 - hypothetical protein 3702 52.45 0 4203744..4203947 + 67 74314320 yifL SSON_3981 - hypothetical protein 3703 55.15 0 4203984..4204808 + 274 161986412 dapF SSON_3982 - diaminopimelate epimerase 3704 55.93 +1 4204805..4205512 + 235 74314322 yigA SSON_3983 - hypothetical protein 3705 54.40 0 4205509..4206405 + 298 74314323 xerC SSON_3984 - site-specific tyrosine recombinase XerC 3706 55.23 0 4206405..4207121 + 238 74314324 yigB SSON_3985 - flavin mononucleotide phosphatase 3707 57.56 +1 4207205..4209367 + 720 74314325 uvrD SSON_3986 - DNA-dependent helicase II 3708 47.07 -1 4209422..4210324 - 300 74314326 - SSON_3987 - hypothetical protein 3709 55.70 0 4210914..4211624 + 236 74314327 - SSON_3988 - IS4 orf 3710 51.49 0 4211621..4212259 + 212 74314328 - SSON_3989 - IS4 orf 3711 52.89 0 4212978..4213928 + 316 74314329 corA SSON_3991 - magnesium/nickel/cobalt transporter CorA 3712 53.97 0 4215095..4215598 - 167 74314330 - SSON_3992 - IS1 ORF 3713 50.45 0 4217384..4218271 - 295 74314331 rarD SSON_3993 - hypothetical protein 3714 53.42 0 4218323..4218790 - 155 161986411 yigI SSON_3994 - hypothetical protein 3715 50.69 0 4218955..4219824 + 289 74314333 pldA SSON_3995 - phospholipase A 3716 54.92 0 4219957..4221786 + 609 74314334 recQ SSON_3996 - ATP-dependent DNA helicase RecQ 3717 52.57 0 4222099..4222467 + 122 74314335 yigJ SSON_3997 - hypothetical protein 3718 50.84 0 4222529..4222945 - 138 74314336 yigK SSON_3998 - hypothetical protein 3719 53.57 0 4223260..4224282 + 340 74314337 pldB SSON_3999 - lysophospholipase L2 3720 51.94 0 4224290..4225090 + 266 74314338 yigL SSON_4000 - putative sugar phosphatase 3721 55.33 0 4225166..4226065 + 299 74314339 yigM SSON_4001 - hypothetical protein 3722 56.50 +1 4225953..4226906 - 317 74314340 metR SSON_4002 - regulator for metE and metH 3723 55.39 0 4227142..4229403 + 753 74314341 metE SSON_4003 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3724 55.08 0 4230427..4231332 + 301 161986410 - SSON_4004 - insertion element IS2 transposase InsD 3725 54.35 0 4232801..4233490 - 229 74314343 ysgA SSON_4005 - putative hydrolase 3726 53.81 0 4233875..4234636 + 253 74314344 udp SSON_4006 - uridine phosphorylase 3727 52.80 0 4234777..4236204 + 475 74314345 yigN SSON_4007 - DNA recombination protein RmuC 3728 51.98 0 4236299..4237054 + 251 74314346 ubiE SSON_4008 - ubiquinone/menaquinone biosynthesis methyltransferase 3729 55.78 0 4237068..4237673 + 201 74314347 yigP SSON_4009 - hypothetical protein 3730 49.66 0 4237670..4239310 + 546 74314348 ubiB SSON_4010 - putative ubiquinone biosynthesis protein UbiB 3731 45.19 -1 4239347..4239658 + 103 74314349 tatA SSON_4011 - twin argininte translocase protein A 3732 55.43 0 4239662..4240177 + 171 161986409 - SSON_4012 - sec-independent translocase 3733 51.48 0 4240180..4240956 + 258 74314351 yigU SSON_4013 - TatABCE protein translocation system subunit 3734 54.34 0 4240986..4241780 + 264 74314352 tatD SSON_4014 - DNase TatD 3735 49.28 0 4241777..4242265 - 162 74314353 rfaH SSON_4015 - transcriptional activator RfaH 3736 53.95 0 4242432..4243925 + 497 74314354 yigC SSON_4016 - 3-octaprenyl-4-hydroxybenzoate decarboxylase 3737 51.85 0 4243972..4244673 + 233 74314355 fre SSON_4017 - FMN reductase 3738 58.42 +1 4244863..4246026 - 387 74314356 fadA SSON_4018 - 3-ketoacyl-CoA thiolase 3739 55.30 0 4246036..4248225 - 729 74314357 fadB SSON_4019 - multifunctional fatty acid oxidation complex subunit alpha 3740 53.38 0 4248415..4249746 + 443 74314358 pepQ SSON_4020 - proline dipeptidase 3741 55.18 0 4249743..4250360 + 205 74314359 yigZ SSON_4021 - hypothetical protein 3742 52.75 0 4250399..4251850 + 483 74314360 trkH SSON_4022 - potassium transporter 3743 50.73 0 4251862..4252407 + 181 74314361 hemG SSON_4023 - protoporphyrinogen oxidase 3744 48.54 0 4257898..4258410 - 170 74314362 mobB SSON_4028 - molybdopterin-guanine dinucleotide biosynthesis protein B 3745 49.91 0 4258407..4258991 - 194 74314363 mobA SSON_4029 - molybdopterin-guanine dinucleotide biosynthesis protein A 3746 45.93 -1 4259061..4259330 + 89 74314364 yihD SSON_4030 - hypothetical protein 3747 48.63 0 4259407..4260393 + 328 74314365 yihE SSON_4031 - serine/threonine protein kinase 3748 47.85 0 4260410..4261036 + 208 74314366 dsbA SSON_4032 - periplasmic protein disulfide isomerase I 3749 54.37 0 4261063..4261566 - 167 74314367 - SSON_4033 - IS1 ORF 3750 45.34 -1 4262609..4263541 - 310 74314368 yihG SSON_4035 - putative endonuclease 3751 52.21 0 4263905..4266691 + 928 74314369 polA SSON_4036 - DNA polymerase I 3752 51.66 0 4267073..4267705 - 210 161986408 yihA SSON_4037 - GTPase EngB 3753 52.55 0 4268287..4268796 + 169 74314371 yihI SSON_4038 - hypothetical protein 3754 53.06 0 4268985..4270358 + 457 161986407 hemN SSON_4039 - coproporphyrinogen III oxidase 3755 56.60 +1 4270770..4272179 - 469 74314373 glnG SSON_4040 - nitrogen regulation protein NR(I) 3756 55.24 0 4272191..4273240 - 349 74314374 glnL SSON_4041 - nitrogen regulation protein NR(II) 3757 52.77 0 4273414..4274823 - 469 74314375 glnA SSON_4042 - glutamine synthetase 3758 53.47 0 4275322..4277019 + 565 74314376 yihK SSON_4043 - putative GTP-binding factor 3759 53.82 0 4277124..4278470 + 448 74314377 - SSON_4044 - IS4 orf 3760 49.94 0 4278563..4279351 - 262 74314378 yihW SSON_4045 - putative DEOR-type transcriptional regulator 3761 53.90 0 4279526..4280872 - 448 74314379 - SSON_4046 - IS4 orf 3762 50.62 0 4280922..4281725 - 267 74314380 yihV SSON_4047 - putative kinase 3763 51.76 0 4281898..4282776 + 292 74314381 yihU SSON_4048 - putative dehydrogenase 3764 51.46 0 4282801..4283688 + 295 74314382 yihT SSON_4049 - putative aldolase 3765 52.72 0 4283721..4284731 + 336 74314383 rspB SSON_4050 - putative dehydrogenase 3766 49.72 0 4284801..4286234 + 477 74314384 - SSON_4051 - putative transporter 3767 46.59 -1 4286333..4287682 + 449 74314385 shiA SSON_4052 - putative transport protein shikimate 3768 49.77 0 4287672..4288559 + 295 74314386 - SSON_4053 - hypothetical protein 3769 50.67 0 4288700..4289299 + 199 161986406 yihX SSON_4054 - phosphatase 3770 50.74 0 4289293..4290165 + 290 74314388 rbn SSON_4055 - ribonuclease BN 3771 55.25 0 4290162..4290599 + 145 74314389 yihZ SSON_4056 - D-tyrosyl-tRNA deacylase 3772 54.65 0 4290596..4291585 + 329 74314390 yiiD SSON_4057 - putative acetyltransferase 3773 54.37 0 4291647..4292150 - 167 74314391 - SSON_4058 - IS1 ORF 3774 45.27 -1 4293217..4293459 + 80 74314392 yiiF SSON_4059 - hypothetical protein 3775 55.48 0 4293789..4294718 - 309 74314393 fdhE SSON_4060 - formate dehydrogenase accessory protein FdhE 3776 52.52 0 4294715..4295350 - 211 74314394 fdoI SSON_4061 - formate dehydrogenase-O subunit gamma 3777 55.81 0 4295347..4296249 - 300 74314395 fdoH SSON_4062 - formate dehydrogenase-O, iron-sulfur subunit 3778 55.20 0 4296262..4299312 - 1016 74314396 fdoG SSON_4063 - formate dehydrogenase-O, major subunit 3779 53.00 0 4299506..4300339 + 277 74314397 fdhD SSON_4064 - formate dehydrogenase accessory protein 3780 54.37 0 4301497..4302000 + 167 74314398 - SSON_4066 - IS1 ORF 3781 49.86 0 4302358..4304106 - 582 74314399 frvR SSON_4067 - putative frv operon regulatory protein 3782 52.75 0 4304106..4305176 - 356 74314400 frvX SSON_4068 - putative fructose-specific phosphotransferase system protein FrvX 3783 55.76 0 4305166..4306623 - 485 74314401 frvB SSON_4069 - putative PTS transporter components IIBC 3784 50.78 0 4306628..4307074 - 148 74314402 frvA SSON_4070 - putative fructose-like phosphotransferase system subunit EIIA 3785 51.43 0 4307375..4307689 - 104 74314403 yiiL SSON_4071 - hypothetical protein 3786 54.91 0 4307699..4308523 - 274 74314404 rhaD SSON_4072 - rhamnulose-1-phosphate aldolase 3787 56.19 +1 4308765..4310024 - 419 74314405 rhaA SSON_4073 - L-rhamnose isomerase 3788 55.58 0 4310021..4311490 - 489 74314406 rhaB SSON_4074 - rhamnulokinase 3789 51.97 0 4311778..4312614 + 278 74314407 rhaS SSON_4075 - transcriptional activator RhaS 3790 51.59 0 4313533..4314567 - 344 74314408 rhaT SSON_4077 - rhamnose-proton symporter 3791 53.46 0 4314852..4315472 + 206 74314409 sodA SSON_4078 - superoxide dismutase 3792 52.64 0 4315732..4316715 + 327 161986405 kdgT SSON_4079 - 2-keto-3-deoxygluconate permease 3793 53.48 0 4316864..4317538 + 224 161986404 yiiM SSON_4080 - hypothetical protein 3794 54.66 0 4317644..4319017 - 457 74314412 cpxA SSON_4081 - two-component sensor protein 3795 51.36 0 4319014..4319712 - 232 74314413 cpxR SSON_4082 - DNA-binding transcriptional regulator CpxR 3796 50.10 0 4319862..4320362 + 166 161986403 cpxP SSON_4083 - periplasmic repressor CpxP 3797 52.49 0 4320510..4321412 + 300 74314415 fieF SSON_4084 - ferrous iron efflux protein F 3798 53.69 0 4321593..4322555 + 320 74314416 pfkA SSON_4085 - 6-phosphofructokinase 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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