IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3686	 55.10	0	4184298..4185179	+	293	74314304	rffH	SSON_3961	-	glucose-1-phosphate thymidylyltransferase
3687	 54.03	0	4185286..4185831	+	181	74314305	wecD	SSON_3962	-	TDP-fucosamine acetyltransferase
3688	 54.64	0	4185836..4186966	+	376	74314306	wecE	SSON_3963	-	TDP-4-oxo-6-deoxy-D-glucose transaminase
3689	 53.40	0	4186968..4188218	+	416	74314307	wzxE	SSON_3964	-	putative cytochrome
3690	 52.41	0	4188215..4189294	+	359	74314308	yifM	SSON_3965	-	4-alpha-L-fucosyltransferase
3691	 52.70	0	4189291..4190643	+	450	74314309	wecF	SSON_3966	-	putative entero common antigen polymerase
3692	 53.44	0	4190646..4191386	+	246	74314310	wecG	SSON_3967	-	putative UDP-N-acetyl-D-mannosaminuronic acid transferase
3693	 53.10	0	4191577..4192962	+	461	74314311	yifK	SSON_3968	-	putative transport protein YifK
3694	 51.38	0	4193646..4194881	+	411	74314312	aslB	SSON_3973	-	putative arylsulfatase regulator
3695	 54.47	0	4195788..4196984	-	398	74314313	hemY	SSON_3974	-	putative protoheme IX biogenesis protein
3696	 54.19	0	4196987..4198204	-	405	74314314	hemX	SSON_3975	-	putative uroporphyrinogen III C-methyltransferase
3697	 53.04	0	4198226..4198966	-	246	74314315	hemD	SSON_3976	-	uroporphyrinogen-III synthase
3698	 55.45	0	4198963..4199925	-	320	74314316	hemC	SSON_3977	-	porphobilinogen deaminase
3699	 52.10	0	4200291..4202837	+	848	74314317	cyaA	SSON_3978	-	adenylate cyclase
3700	 53.58	0	4202877..4203197	-	106	74314319	cyaY	SSON_3980	-	frataxi