IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3667	 56.29	+1	4162833..4164683	+	616	74314285	ilvD	SSON_3942	-	dihydroxy-acid dehydratase
3668	 58.51	+1	4164686..4166230	+	514	74314286	ilvA	SSON_3943	-	threonine dehydratase
3669	 57.61	+1	4166282..4167175	-	297	74314287	ilvY	SSON_3944	-	DNA-binding transcriptional regulator IlvY
3670	 54.47	0	4167325..4168800	+	491	74314288	ilvC	SSON_3945	-	ketol-acid reductoisomerase
3671	 50.71	0	4168887..4169168	-	93	74314289	ppiC	SSON_3946	-	peptidyl-prolyl cis-trans isomerase C
3672	 55.19	0	4169690..4170595	-	301	161986413	-	SSON_3947	-	insertion element IS2 transposase InsD
3673	 53.01	0	4170553..4170918	-	121	74314291	-	SSON_3948	-	insertion sequence 2 OrfA protein
3674	 53.86	0	4171369..4173390	+	673	74314292	rep	SSON_3949	-	ATP-dependent DNA helicase Rep
3675	 53.80	0	4173437..4174921	-	494	74314293	gppA	SSON_3950	-	guanosine pentaphosphate phosphohydrolase
3676	 52.05	0	4175055..4176320	-	421	74314294	rhlB	SSON_3951	-	ATP-dependent RNA helicase RhlB
3677	 50.00	0	4176397..4176780	+	127	74314295	trxA	SSON_3952	-	thioredoxin
3678	 49.02	0	4176921..4177022	+	33	74314296	rhoL	SSON_3953	-	putative Rho operon leader peptide
3679	 50.32	0	4177107..4178366	+	419	74314297	rho	SSON_3954	-	transcription termination factor Rho
3680	 41.10	-2	4178376..4178594	+	72	74314298	-	SSON_3955	-	hypothetical protein
3681	 49.37	0	4178606..4179709	+	367	74314299	rfe	SSON_3956	-	UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase
3682