IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3658	 48.69	0	4153569..4154408	-	279	74314276	yifDA	SSON_3932	-	transcriptional regulator HdfR
3659	 47.79	0	4154527..4154865	+	112	74314277	yifE	SSON_3933	-	hypothetical protein
3660	 52.63	0	4155340..4156137	-	265	74314278	-	SSON_3934	-	IS21 ORF2
3661	 53.03	0	4156137..4157309	-	390	74314279	-	SSON_3935	-	IS21 ORF1
3662	 54.37	0	4157910..4158413	+	167	74314280	-	SSON_3936	-	IS1 ORF
3663	 52.53	0	4159675..4159773	+	32	74314281	ilvL	SSON_3938	-	ilvG operon leader peptide
3664	 54.40	0	4159913..4161559	+	548	74314282	ilvG	SSON_3939	-	acetolactate synthase 2 catalytic subunit
3665	 49.24	0	4161556..4161819	+	87	74314283	ilvM	SSON_3940	-	acetolactate synthase 2 regulatory subunit
3666	 54.84	0	4161839..4162768	+	309	74314284	ilvE	SSON_3941	-	branched-chain amino acid aminotransferase
3667	 56.29	+1	4162833..4164683	+	616	74314285	ilvD	SSON_3942	-	dihydroxy-acid dehydratase
3668	 58.51	+1	4164686..4166230	+	514	74314286	ilvA	SSON_3943	-	threonine dehydratase
3669	 57.61	+1	4166282..4167175	-	297	74314287	ilvY	SSON_3944	-	DNA-binding transcriptional regulator IlvY
3670	 54.47	0	4167325..4168800	+	491	74314288	ilvC	SSON_3945	-	ketol-acid reductoisomerase
3671	 50.71	0	4168887..4169168	-	93	74314289	ppiC	SSON_3946	-	peptidyl-prolyl cis-trans isomerase C
3672	 55.19	0	4169690..4170595	-	301	161986413	-	SSON_3947	-	insertion element IS2 transposase InsD
3673	 53.01	0	4170553..4170918	-	121