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Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3648 45.02 -1 4134352..4135968 + 538 74314266 yieC SSON_3915 - putative receptor protein 3649 53.90 0 4136256..4137602 + 448 74314267 - SSON_3916 - IS4 orf 3650 51.52 0 4137761..4139629 + 622 74314268 trkD SSON_3917 - potassium transport protein Kup 3651 47.15 -1 4139760..4140215 + 151 74314269 rbsD SSON_3918 - D-ribose pyranase 3652 51.26 0 4140223..4141728 + 501 74314270 rbsA SSON_3919 - D-ribose transporter ATP binding protein 3653 53.31 0 4141733..4142698 + 321 74314271 rbsC SSON_3920 - ribose ABC transporter permease protein 3654 52.15 0 4143735..4144664 + 309 74314272 rbsK SSON_3922 - ribokinase 3655 50.55 0 4144668..4145660 + 330 74314273 rbsR SSON_3923 - transcriptional repressor RbsR 3656 49.30 0 4145626..4147053 - 475 74314274 yieO SSON_3924 - putative transport protein 3657 49.73 0 4147076..4147624 - 182 74314275 yieP SSON_3925 - hypothetical protein 3658 48.69 0 4153569..4154408 - 279 74314276 yifDA SSON_3932 - transcriptional regulator HdfR 3659 47.79 0 4154527..4154865 + 112 74314277 yifE SSON_3933 - hypothetical protein 3660 52.63 0 4155340..4156137 - 265 74314278 - SSON_3934 - IS21 ORF2 3661 53.03 0 4156137..4157309 - 390 74314279 - SSON_3935 - IS21 ORF1 3662 54.37 0 4157910..4158413 + 167 74314280 - SSON_3936 - IS1 ORF 3663 52.53 0 4159675..4159773 + 32 74314281 ilvL SSON_3938 - ilvG operon leader peptide 3664 54.40 0 4159913..4161559 + 548 74314282 ilvG SSON_3939 - acetolactate synthase 2 catalytic subunit 3665 49.24 0 4161556..4161819 + 87 74314283 ilvM SSON_3940 - acetolactate synthase 2 regulatory subunit 3666 54.84 0 4161839..4162768 + 309 74314284 ilvE SSON_3941 - branched-chain amino acid aminotransferase 3667 56.29 +1 4162833..4164683 + 616 74314285 ilvD SSON_3942 - dihydroxy-acid dehydratase 3668 58.51 +1 4164686..4166230 + 514 74314286 ilvA SSON_3943 - threonine dehydratase 3669 57.61 +1 4166282..4167175 - 297 74314287 ilvY SSON_3944 - DNA-binding transcriptional regulator IlvY 3670 54.47 0 4167325..4168800 + 491 74314288 ilvC SSON_3945 - ketol-acid reductoisomerase 3671 50.71 0 4168887..4169168 - 93 74314289 ppiC SSON_3946 - peptidyl-prolyl cis-trans isomerase C 3672 55.19 0 4169690..4170595 - 301 161986413 - SSON_3947 - insertion element IS2 transposase InsD 3673 53.01 0 4170553..4170918 - 121 74314291 - SSON_3948 - insertion sequence 2 OrfA protein 3674 53.86 0 4171369..4173390 + 673 74314292 rep SSON_3949 - ATP-dependent DNA helicase Rep 3675 53.80 0 4173437..4174921 - 494 74314293 gppA SSON_3950 - guanosine pentaphosphate phosphohydrolase 3676 52.05 0 4175055..4176320 - 421 74314294 rhlB SSON_3951 - ATP-dependent RNA helicase RhlB 3677 50.00 0 4176397..4176780 + 127 74314295 trxA SSON_3952 - thioredoxin 3678 49.02 0 4176921..4177022 + 33 74314296 rhoL SSON_3953 - putative Rho operon leader peptide 3679 50.32 0 4177107..4178366 + 419 74314297 rho SSON_3954 - transcription termination factor Rho 3680 41.10 -2 4178376..4178594 + 72 74314298 - SSON_3955 - hypothetical protein 3681 49.37 0 4178606..4179709 + 367 74314299 rfe SSON_3956 - UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase 3682 52.48 0 4179718..4180767 + 349 74314300 wzzE SSON_3957 - lipopolysaccharide biosynthesis protein WzzE 3683 52.26 0 4180781..4181953 + 390 74314301 wecB SSON_3958 - UDP-N-acetyl glucosamine-2-epimerase 3684 53.92 0 4181950..4183212 + 420 74314302 wecC SSON_3959 - UDP-N-acetyl-D-mannosamine dehydrogenase 3685 53.65 0 4183212..4184279 + 355 74314303 rffG SSON_3960 - dTDP-glucose 4,6-dehydratase 3686 55.10 0 4184298..4185179 + 293 74314304 rffH SSON_3961 - glucose-1-phosphate thymidylyltransferase 3687 54.03 0 4185286..4185831 + 181 74314305 wecD SSON_3962 - TDP-fucosamine acetyltransferase 3688 54.64 0 4185836..4186966 + 376 74314306 wecE SSON_3963 - TDP-4-oxo-6-deoxy-D-glucose transaminase 3689 53.40 0 4186968..4188218 + 416 74314307 wzxE SSON_3964 - putative cytochrome 3690 52.41 0 4188215..4189294 + 359 74314308 yifM SSON_3965 - 4-alpha-L-fucosyltransferase 3691 52.70 0 4189291..4190643 + 450 74314309 wecF SSON_3966 - putative entero common antigen polymerase 3692 53.44 0 4190646..4191386 + 246 74314310 wecG SSON_3967 - putative UDP-N-acetyl-D-mannosaminuronic acid transferase 3693 53.10 0 4191577..4192962 + 461 74314311 yifK SSON_3968 - putative transport protein YifK 3694 51.38 0 4193646..4194881 + 411 74314312 aslB SSON_3973 - putative arylsulfatase regulator 3695 54.47 0 4195788..4196984 - 398 74314313 hemY SSON_3974 - putative protoheme IX biogenesis protein 3696 54.19 0 4196987..4198204 - 405 74314314 hemX SSON_3975 - putative uroporphyrinogen III C-methyltransferase 3697 53.04 0 4198226..4198966 - 246 74314315 hemD SSON_3976 - uroporphyrinogen-III synthase 3698 55.45 0 4198963..4199925 - 320 74314316 hemC SSON_3977 - porphobilinogen deaminase 3699 52.10 0 4200291..4202837 + 848 74314317 cyaA SSON_3978 - adenylate cyclase 3700 53.58 0 4202877..4203197 - 106 74314319 cyaY SSON_3980 - frataxin-like protein 3701 50.00 0 4202988..4203473 + 161 74314318 - SSON_3979 - hypothetical protein 3702 52.45 0 4203744..4203947 + 67 74314320 yifL SSON_3981 - hypothetical protein 3703 55.15 0 4203984..4204808 + 274 161986412 dapF SSON_3982 - diaminopimelate epimerase 3704 55.93 +1 4204805..4205512 + 235 74314322 yigA SSON_3983 - hypothetical protein 3705 54.40 0 4205509..4206405 + 298 74314323 xerC SSON_3984 - site-specific tyrosine recombinase XerC 3706 55.23 0 4206405..4207121 + 238 74314324 yigB SSON_3985 - flavin mononucleotide phosphatase 3707 57.56 +1 4207205..4209367 + 720 74314325 uvrD SSON_3986 - DNA-dependent helicase II 3708 47.07 -1 4209422..4210324 - 300 74314326 - SSON_3987 - hypothetical protein 3709 55.70 0 4210914..4211624 + 236 74314327 - SSON_3988 - IS4 orf 3710 51.49 0 4211621..4212259 + 212 74314328 - SSON_3989 - IS4 orf 3711 52.89 0 4212978..4213928 + 316 74314329 corA SSON_3991 - magnesium/nickel/cobalt transporter CorA 3712 53.97 0 4215095..4215598 - 167 74314330 - SSON_3992 - IS1 ORF 3713 50.45 0 4217384..4218271 - 295 74314331 rarD SSON_3993 - hypothetical protein 3714 53.42 0 4218323..4218790 - 155 161986411 yigI SSON_3994 - hypothetical protein 3715 50.69 0 4218955..4219824 + 289 74314333 pldA SSON_3995 - phospholipase A 3716 54.92 0 4219957..4221786 + 609 74314334 recQ SSON_3996 - ATP-dependent DNA helicase RecQ 3717 52.57 0 4222099..4222467 + 122 74314335 yigJ SSON_3997 - hypothetical protein 3718 50.84 0 4222529..4222945 - 138 74314336 yigK SSON_3998 - hypothetical protein 3719 53.57 0 4223260..4224282 + 340 74314337 pldB SSON_3999 - lysophospholipase L2 3720 51.94 0 4224290..4225090 + 266 74314338 yigL SSON_4000 - putative sugar phosphatase 3721 55.33 0 4225166..4226065 + 299 74314339 yigM SSON_4001 - hypothetical protein 3722 56.50 +1 4225953..4226906 - 317 74314340 metR SSON_4002 - regulator for metE and metH 3723 55.39 0 4227142..4229403 + 753 74314341 metE SSON_4003 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3724 55.08 0 4230427..4231332 + 301 161986410 - SSON_4004 - insertion element IS2 transposase InsD 3725 54.35 0 4232801..4233490 - 229 74314343 ysgA SSON_4005 - putative hydrolase 3726 53.81 0 4233875..4234636 + 253 74314344 udp SSON_4006 - uridine phosphorylase 3727 52.80 0 4234777..4236204 + 475 74314345 yigN SSON_4007 - DNA recombination protein RmuC 3728 51.98 0 4236299..4237054 + 251 74314346 ubiE SSON_4008 - ubiquinone/menaquinone biosynthesis methyltransferase 3729 55.78 0 4237068..4237673 + 201 74314347 yigP SSON_4009 - hypothetical protein 3730 49.66 0 4237670..4239310 + 546 74314348 ubiB SSON_4010 - putative ubiquinone biosynthesis protein UbiB 3731 45.19 -1 4239347..4239658 + 103 74314349 tatA SSON_4011 - twin argininte translocase protein A 3732 55.43 0 4239662..4240177 + 171 161986409 - SSON_4012 - sec-independent translocase 3733 51.48 0 4240180..4240956 + 258 74314351 yigU SSON_4013 - TatABCE protein translocation system subunit 3734 54.34 0 4240986..4241780 + 264 74314352 tatD SSON_4014 - DNase TatD 3735 49.28 0 4241777..4242265 - 162 74314353 rfaH SSON_4015 - transcriptional activator RfaH 3736 53.95 0 4242432..4243925 + 497 74314354 yigC SSON_4016 - 3-octaprenyl-4-hydroxybenzoate decarboxylase 3737 51.85 0 4243972..4244673 + 233 74314355 fre SSON_4017 - FMN reductase 3738 58.42 +1 4244863..4246026 - 387 74314356 fadA SSON_4018 - 3-ketoacyl-CoA thiolase 3739 55.30 0 4246036..4248225 - 729 74314357 fadB SSON_4019 - multifunctional fatty acid oxidation complex subunit alpha 3740 53.38 0 4248415..4249746 + 443 74314358 pepQ SSON_4020 - proline dipeptidase 3741 55.18 0 4249743..4250360 + 205 74314359 yigZ SSON_4021 - hypothetical protein 3742 52.75 0 4250399..4251850 + 483 74314360 trkH SSON_4022 - potassium transporter 3743 50.73 0 4251862..4252407 + 181 74314361 hemG SSON_4023 - protoporphyrinogen oxidase 3744 48.54 0 4257898..4258410 - 170 74314362 mobB SSON_4028 - molybdopterin-guanine dinucleotide biosynthesis protein B 3745 49.91 0 4258407..4258991 - 194 74314363 mobA SSON_4029 - molybdopterin-guanine dinucleotide biosynthesis protein A 3746 45.93 -1 4259061..4259330 + 89 74314364 yihD SSON_4030 - hypothetical protein 3747 48.63 0 4259407..4260393 + 328 74314365 yihE SSON_4031 - serine/threonine protein kinase 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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