IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3648	 45.02	-1	4134352..4135968	+	538	74314266	yieC	SSON_3915	-	putative receptor protein
3649	 53.90	0	4136256..4137602	+	448	74314267	-	SSON_3916	-	IS4 orf
3650	 51.52	0	4137761..4139629	+	622	74314268	trkD	SSON_3917	-	potassium transport protein Kup
3651	 47.15	-1	4139760..4140215	+	151	74314269	rbsD	SSON_3918	-	D-ribose pyranase
3652	 51.26	0	4140223..4141728	+	501	74314270	rbsA	SSON_3919	-	D-ribose transporter ATP binding protein
3653	 53.31	0	4141733..4142698	+	321	74314271	rbsC	SSON_3920	-	ribose ABC transporter permease protein
3654	 52.15	0	4143735..4144664	+	309	74314272	rbsK	SSON_3922	-	ribokinase
3655	 50.55	0	4144668..4145660	+	330	74314273	rbsR	SSON_3923	-	transcriptional repressor RbsR
3656	 49.30	0	4145626..4147053	-	475	74314274	yieO	SSON_3924	-	putative transport protein
3657	 49.73	0	4147076..4147624	-	182	74314275	yieP	SSON_3925	-	hypothetical protein
3658	 48.69	0	4153569..4154408	-	279	74314276	yifDA	SSON_3932	-	transcriptional regulator HdfR
3659	 47.79	0	4154527..4154865	+	112	74314277	yifE	SSON_3933	-	hypothetical protein
3660	 52.63	0	4155340..4156137	-	265	74314278	-	SSON_3934	-	IS21 ORF2
3661	 53.03	0	4156137..4157309	-	390	74314279	-	SSON_3935	-	IS21 ORF1
3662	 54.37	0	4157910..4158413	+	167	74314280	-	SSON_3936	-	IS1 ORF
3663	 52.53	0	4159675..4159773	+	32