IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3634	 53.90	0	4114725..4116071	+	448	74314252	-	SSON_3898	-	IS4 orf
3635	 47.64	0	4116363..4116935	+	190	74314253	lpfA	SSON_3899	-	putative major fimbrial subunit
3636	 37.62	-2	4116983..4117285	+	100	74314254	-	SSON_3900	-	putative fimbrial chaperone
3637	 54.37	0	4117296..4117799	-	167	74314255	-	SSON_3901	-	IS1 ORF
3638	 54.52	0	4119494..4120333	-	279	74314256	-	SSON_3904	-	IS911 ORF2
3639	 39.39	-2	4122301..4123374	+	357	74314257	-	SSON_3905	-	putative fimbrial protein
3640	 51.30	0	4123622..4124662	+	346	74314258	pstS	SSON_3906	-	phosphate transporter subunit
3641	 54.58	0	4124749..4125708	+	319	74314259	pstC	SSON_3907	-	phosphate transporter permease subunit
3642	 56.90	+1	4125708..4126598	+	296	74314260	pstA	SSON_3908	-	phosphate transporter permease subunit
3643	 52.07	0	4126689..4127462	+	257	74314261	pstB	SSON_3909	-	phosphate transporter subunit
3644	 52.07	0	4127477..4128202	+	241	74314262	phoU	SSON_3910	-	transcriptional regulator PhoU
3645	 42.65	-2	4128488..4129324	+	278	74314263	bglG	SSON_3911	-	transcriptional antiterminator BglG
3646	 51.44	0	4129458..4131335	+	625	74314264	bglF	SSON_3912	-	beta-glucoside-specific PTS system components IIABC
3647	 49.86	0	4131971..4133059	-	362	74314265	-	SSON_3914	-	putative transposase
3648	 45.02	-1	4134352..4135968	+	538	74314266	yieC	SSON_3915	-	putative receptor protein
3649	 53.90	0	4136256..4137602	+	448