IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3615	 54.50	0	4086758..4088647	+	629	74314233	gidA	SSON_3878	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
3616	 48.72	0	4088711..4089334	+	207	74314234	gidB	SSON_3879	-	glucose-inhibited division protein B
3617	 51.97	0	4089951..4090331	+	126	161986414	atpI	SSON_3880	-	F0F1 ATP synthase subunit I
3618	 50.25	0	4090340..4091155	+	271	74314236	atpB	SSON_3881	-	F0F1 ATP synthase subunit A
3619	 54.17	0	4091202..4091441	+	79	74314237	atpE	SSON_3882	-	F0F1 ATP synthase subunit C
3620	 52.65	0	4091503..4091973	+	156	74314238	atpF	SSON_3883	-	F0F1 ATP synthase subunit B
3621	 51.69	0	4091988..4092521	+	177	74314239	atpH	SSON_3884	-	F0F1 ATP synthase subunit delta
3622	 53.31	0	4092534..4094075	+	513	74314240	atpA	SSON_3885	-	F0F1 ATP synthase subunit alpha
3623	 53.12	0	4094126..4094989	+	287	74314241	atpG	SSON_3886	-	F0F1 ATP synthase subunit gamma
3624	 54.88	0	4095016..4096398	+	460	74314242	atpD	SSON_3887	-	F0F1 ATP synthase subunit beta
3625	 55.24	0	4096419..4096838	+	139	74314243	atpC	SSON_3888	-	F0F1 ATP synthase subunit epsilon
3626	 52.81	0	4097189..4098559	+	456	74314244	glmU	SSON_3889	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
3627	 53.72	0	4098721..4100550	+	609	74314245	glmS	SSON_3890	-	D-fructose-6-phosphate amidotransferase
3628	 38.53	-2	4100934..4101530	+	198	74314246	-	SSON_3891	-	putative transposase
3629	 44.00	-1	4101517..4103625	+	702