IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3609	 53.82	0	4079796..4081142	-	448	74314227	-	SSON_3872	-	IS4 orf
3610	 49.51	0	4081274..4082794	+	506	74314228	yieN	SSON_3873	-	regulatory ATPase RavA
3611	 52.82	0	4082788..4084239	+	483	74314229	yieM	SSON_3874	-	hypothetical protein
3612	 56.29	+1	4084244..4085236	-	330	74314230	asnA	SSON_3875	-	asparagine synthetase AsnA
3613	 48.80	0	4085388..4085846	+	152	74314231	asnC	SSON_3876	-	DNA-binding transcriptional regulator AsnC
3614	 49.77	0	4085936..4086379	+	147	74314232	mioC	SSON_3877	-	flavodoxin
3615	 54.50	0	4086758..4088647	+	629	74314233	gidA	SSON_3878	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
3616	 48.72	0	4088711..4089334	+	207	74314234	gidB	SSON_3879	-	glucose-inhibited division protein B
3617	 51.97	0	4089951..4090331	+	126	161986414	atpI	SSON_3880	-	F0F1 ATP synthase subunit I
3618	 50.25	0	4090340..4091155	+	271	74314236	atpB	SSON_3881	-	F0F1 ATP synthase subunit A
3619	 54.17	0	4091202..4091441	+	79	74314237	atpE	SSON_3882	-	F0F1 ATP synthase subunit C
3620	 52.65	0	4091503..4091973	+	156	74314238	atpF	SSON_3883	-	F0F1 ATP synthase subunit B
3621	 51.69	0	4091988..4092521	+	177	74314239	atpH	SSON_3884	-	F0F1 ATP synthase subunit delta
3622	 53.31	0	4092534..4094075	+	513	74314240	atpA	SSON_3885	-	F0F1 ATP synthase subunit alpha
3623	 53.12	0	4094126..4094989	+	287	74314241	atpG	SSON_3886	-	F0F1 ATP synthase subunit gamma
3624	 54.88	0	4095016..4096398	+	460