IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3601	 54.11	0	4069132..4070628	+	498	74314219	yhjJ	SSON_3864	-	hypothetical protein
3602	 54.57	0	4070724..4071872	-	382	74314220	kdgK	SSON_3865	-	ketodeoxygluconokinase
3603	 53.05	0	4071882..4072652	+	256	74314221	yhjH	SSON_3866	-	EAL domain-containing protein
3604	 52.99	0	4072707..4074782	+	691	74314222	yhjG	SSON_3867	-	hypothetical protein
3605	 56.01	+1	4074964..4076286	-	440	74314223	yhjE	SSON_3868	-	putative transport protein
3606	 52.96	0	4076697..4077710	-	337	74314224	yhjD	SSON_3869	-	hypothetical protein
3607	 52.06	0	4077759..4078730	-	323	74314225	yhjC	SSON_3870	-	putative transcriptional regulator LYSR-type
3608	 47.93	0	4079178..4079780	+	200	74314226	yhjB	SSON_3871	-	putative regulator
3609	 53.82	0	4079796..4081142	-	448	74314227	-	SSON_3872	-	IS4 orf
3610	 49.51	0	4081274..4082794	+	506	74314228	yieN	SSON_3873	-	regulatory ATPase RavA
3611	 52.82	0	4082788..4084239	+	483	74314229	yieM	SSON_3874	-	hypothetical protein
3612	 56.29	+1	4084244..4085236	-	330	74314230	asnA	SSON_3875	-	asparagine synthetase AsnA
3613	 48.80	0	4085388..4085846	+	152	74314231	asnC	SSON_3876	-	DNA-binding transcriptional regulator AsnC
3614	 49.77	0	4085936..4086379	+	147	74314232	mioC	SSON_3877	-	flavodoxin
3615	 54.50	0	4086758..4088647	+	629	74314233	gidA	SSON_3878	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
3616	 48.72	0	4088711..4089334	+	207