IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3579	 54.50	0	4030990..4033191	+	733	74314197	bisC	SSON_3839	-	biotin sulfoxide reductase
3580	 52.15	0	4033160..4033600	-	146	74314198	yiaC	SSON_3840	-	hypothetical protein
3581	 49.82	0	4033597..4034160	-	187	74314199	tag	SSON_3841	-	3-methyl-adenine DNA glycosylase I
3582	 49.79	0	4034312..4035016	+	234	74314200	yhjY	SSON_3842	-	putative lipase
3583	 51.28	0	4035245..4036453	+	402	74314201	yhjX	SSON_3843	-	putative resistance protein
3584	 50.47	0	4036777..4038468	+	563	161986415	yhjW	SSON_3844	-	phosphoethanolamine transferase
3585	 51.80	0	4039717..4041324	+	535	74314203	dppA	SSON_3846	-	dipeptide transport protein
3586	 56.08	+1	4041632..4042651	+	339	74314204	dppB	SSON_3847	-	dipeptide transporter permease DppB
3587	 59.25	+1	4042661..4043563	+	300	74314205	dppC	SSON_3848	-	dipeptide transporter
3588	 56.61	+1	4043574..4044557	+	327	74314206	dppD	SSON_3849	-	dipeptide transporter ATP-binding subunit
3589	 56.22	+1	4044554..4045558	+	334	74314207	dppF	SSON_3850	-	dipeptide transporter ATP-binding subunit
3590	 45.36	-1	4045588..4046859	-	423	74314208	yhjV	SSON_3851	-	putative transporter protein
3591	 52.32	0	4050427..4052106	-	559	74314209	yhjU	SSON_3852	-	hypothetical protein
3592	 47.62	0	4052103..4052291	-	62	74314210	yhjT	SSON_3853	-	hypothetical protein
3593	 48.92	0	4052291..4053862	-	523	74314211	yhjS	SSON_3854	-	putative protease
3594	 54.37	0	4053918..4054421	-	167