IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3559	 54.37	0	4013277..4013780	-	167	74314177	-	SSON_3819	-	IS1 ORF
3560	 50.64	0	4014034..4015356	+	440	74314178	xylA	SSON_3820	-	xylose isomerase
3561	 54.20	0	4015428..4016759	+	443	74314179	xylB	SSON_3821	-	xylulokinase
3562	 40.96	-2	4017040..4017393	+	117	74314180	yiaB	SSON_3822	-	hypothetical protein
3563	 55.19	0	4017595..4018500	-	301	161986417	-	SSON_3823	-	insertion element IS2 transposase InsD
3564	 53.01	0	4018458..4018823	-	121	74314182	-	SSON_3824	-	insertion sequence 2 OrfA protein
3565	 46.53	-1	4019107..4019409	+	100	74314183	-	SSON_3825	-	IS600 ORF1
3566	 52.10	0	4019550..4020263	+	237	74314184	-	SSON_3826	-	IS600 ORF2
3567	 46.79	-1	4020521..4021516	-	331	74314185	yiaH	SSON_3827	-	hypothetical protein
3568	 48.00	0	4021691..4021990	+	99	74314186	-	SSON_3828	-	putative lipoprotein
3569	 55.81	0	4022085..4022996	+	303	74314187	glyQ	SSON_3829	-	glycyl-tRNA synthetase subunit alpha
3570	 55.36	0	4023006..4025075	+	689	74314188	glyS	SSON_3830	-	glycyl-tRNA synthetase subunit beta
3571	 34.64	-2	4025401..4025553	+	50	74314189	yiaZ	SSON_3831	-	small toxic polypeptide
3572	 48.36	0	4025741..4025953	-	70	74314190	cspA	SSON_3832	-	major cold shock protein
3573	 44.33	-1	4026234..4026524	-	96	74314191	yiaG	SSON_3833	-	putative transcriptional regulator
3574	 49.70	0	4026838..4027668	+	276