IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3150	 48.83	0	3557834..3558304	+	156	74313768	argR	SSON_3379	-	arginine repressor
3151	 46.67	-1	3558618..3558932	+	104	74313769	yhcN	SSON_3380	-	hypothetical protein
3152	 42.49	-2	3558988..3559260	-	90	74313770	yhcO	SSON_3381	-	hypothetical protein
3153	 52.54	0	3559352..3561319	-	655	74313771	yhcP	SSON_3382	-	p-hydroxybenzoic acid efflux subunit AaeB
3154	 53.48	0	3561325..3562257	-	310	74313772	yhcQ	SSON_3383	-	p-hydroxybenzoic acid efflux subunit AaeA
3155	 47.06	-1	3562265..3562468	-	67	161986437	yhcR	SSON_3384	-	hypothetical protein
3156	 54.84	0	3563644..3565089	-	481	74313774	tldD	SSON_3386	-	protease TldD
3157	 53.41	0	3565245..3569045	-	1266	74313775	yhdRP	SSON_3387	-	hypothetical protein
3158	 52.31	0	3569113..3570582	-	489	161986436	cafA	SSON_3388	-	ribonuclease G
3159	 53.70	0	3570572..3571165	-	197	74313777	yhdE	SSON_3389	-	Maf-like protein
3160	 50.92	0	3571174..3571662	-	162	74313778	mreD	SSON_3390	-	rod shape-determining protein MreD
3161	 55.98	+1	3571662..3572765	-	367	74313779	mreC	SSON_3391	-	cell wall structural complex MreBCD transmembrane component MreC
3162	 53.89	0	3572831..3573934	-	367	74313780	mreB	SSON_3392	-	regulator of ftsI
3163	 50.49	0	3574179..3576119	-	646	74313781	yhdA	SSON_3393	-	regulatory protein CsrD
3164	 55.28	0	3576271..3577245	+	324	74313782	yhdH	SSON_3394	-	putative dehydrogenase
3165	 47.06	-1	3577303..3577404	-	33