version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3140 55.02 0 3547972..3548469 - 165 74313758 sspB SSON_3369 - ClpXP protease specificity-enhancing factor 3141 53.68 0 3548475..3549113 - 212 74313759 sspA SSON_3370 - stringent starvation protein A 3142 52.16 0 3549508..3549900 - 130 74313760 rpsI SSON_3371 - 30S ribosomal protein S9 3143 50.12 0 3549916..3550344 - 142 74313761 rplM SSON_3372 - 50S ribosomal protein L13 3144 52.04 0 3550563..3551690 - 375 74313762 yhcM SSON_3373 - hypothetical protein 3145 54.07 0 3551878..3552282 + 134 74313763 yhcB SSON_3374 - cytochrome d ubiquinol oxidase subunit III 3146 52.19 0 3552436..3553803 + 455 74313764 degQ SSON_3375 - serine endoprotease 3147 52.90 0 3553893..3554960 + 355 74313765 degS SSON_3376 - serine endoprotease 3148 53.90 0 3555011..3556357 - 448 74313766 - SSON_3377 - IS4 orf 3149 51.86 0 3556461..3557399 - 312 74313767 mdh SSON_3378 - malate dehydrogenase 3150 48.83 0 3557834..3558304 + 156 74313768 argR SSON_3379 - arginine repressor 3151 46.67 -1 3558618..3558932 + 104 74313769 yhcN SSON_3380 - hypothetical protein 3152 42.49 -2 3558988..3559260 - 90 74313770 yhcO SSON_3381 - hypothetical protein 3153 52.54 0 3559352..3561319 - 655 74313771 yhcP SSON_3382 - p-hydroxybenzoic acid efflux subunit AaeB 3154 53.48 0 3561325..3562257 - 310 74313772 yhcQ SSON_3383 - p-hydroxybenzoic acid efflux subunit AaeA 3155 47.06 -1 3562265..3562468 - 67 161986437 yhcR SSON_3384 - hypothetical protein 3156 54.84 0 3563644..3565089 - 481 74313774 tldD SSON_3386 - protease TldD 3157 53.41 0 3565245..3569045 - 1266 74313775 yhdRP SSON_3387 - hypothetical protein 3158 52.31 0 3569113..3570582 - 489 161986436 cafA SSON_3388 - ribonuclease G 3159 53.70 0 3570572..3571165 - 197 74313777 yhdE SSON_3389 - Maf-like protein 3160 50.92 0 3571174..3571662 - 162 74313778 mreD SSON_3390 - rod shape-determining protein MreD 3161 55.98 +1 3571662..3572765 - 367 74313779 mreC SSON_3391 - cell wall structural complex MreBCD transmembrane component MreC 3162 53.89 0 3572831..3573934 - 367 74313780 mreB SSON_3392 - regulator of ftsI 3163 50.49 0 3574179..3576119 - 646 74313781 yhdA SSON_3393 - regulatory protein CsrD 3164 55.28 0 3576271..3577245 + 324 74313782 yhdH SSON_3394 - putative dehydrogenase 3165 47.06 -1 3577303..3577404 - 33 74313783 - SSON_3395 - hypothetical protein 3166 51.80 0 3578223..3578693 + 156 74313784 accB SSON_3396 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3167 53.41 0 3578704..3580053 + 449 74313785 accC SSON_3397 - acetyl-CoA carboxylase biotin carboxylase subunit 3168 54.32 0 3580162..3580404 + 80 74313786 yhdT SSON_3398 - hypothetical protein 3169 54.48 0 3580394..3581845 + 483 161986435 panF SSON_3399 - sodium/panthothenate symporter 3170 54.31 0 3581857..3582738 + 293 74313788 prmA SSON_3400 - ribosomal protein L11 methyltransferase 3171 52.28 0 3583067..3584032 + 321 74313789 yhdG SSON_3401 - tRNA-dihydrouridine synthase B 3172 47.14 -1 3584058..3584354 + 98 74313790 fis SSON_3402 - DNA-binding protein Fis 3173 47.57 0 3584440..3585324 + 294 161986434 yhdJ SSON_3403 - putative methyltransferase 3174 39.44 -2 3585408..3585587 + 59 74313792 yhdU SSON_3404 - hypothetical protein 3175 44.04 -1 3585590..3586252 - 220 74313793 envR SSON_3405 - DNA-binding transcriptional regulator EnvR 3176 52.33 0 3586651..3587808 + 385 74313794 acrE SSON_3406 - AcrE 3177 54.37 0 3591150..3591653 + 167 74313795 - SSON_3408 - IS1 ORF 3178 50.00 0 3592110..3593027 + 305 74313796 yhdW SSON_3409 - putative periplasmic binding transport protein 3179 51.85 0 3594283..3595389 + 368 74313797 yhdY SSON_3411 - putative transport system permease protein 3180 47.04 -1 3595397..3596155 + 252 74313798 yhdZ SSON_3412 - putative ATP-binding component of a transport system 3181 45.78 -1 3601820..3602590 + 256 74313799 yrdA SSON_3420 - putative transferase 3182 48.06 0 3602566..3602823 - 85 74313800 yrdB SSON_3421 - hypothetical protein 3183 48.96 0 3602820..3603638 - 272 74313801 aroE SSON_3422 - shikimate 5-dehydrogenase 3184 52.71 0 3603643..3604215 - 190 74313802 yrdC SSON_3423 - putative ribosome maturation factor 3185 46.41 -1 3604791..3605264 - 157 74313803 smg SSON_3425 - hypothetical protein 3186 51.11 0 3605236..3606360 - 374 74313804 smf SSON_3426 - hypothetical protein 3187 46.67 -1 3606490..3606999 + 169 74313805 def SSON_3427 - peptide deformylase 3188 53.16 0 3607014..3607961 + 315 74313806 fmt SSON_3428 - methionyl-tRNA formyltransferase 3189 50.00 0 3608007..3609296 + 429 74313807 sun SSON_3429 - 16S rRNA methyltransferase B 3190 49.96 0 3609318..3610694 + 458 74313808 trkA SSON_3430 - potassium transporter peripheral membrane component 3191 45.26 -1 3610824..3611234 + 136 74313809 mscL SSON_3431 - large-conductance mechanosensitive channel 3192 42.92 -2 3611231..3611449 - 72 74313810 yhdL SSON_3432 - hypothetical protein 3193 50.00 0 3611505..3611930 - 141 74313811 zntR SSON_3433 - zinc-responsive transcriptional regulator 3194 47.97 0 3611941..3612309 - 122 74313812 yhdN SSON_3434 - hypothetical protein 3195 53.39 0 3612416..3612799 - 127 74313813 rplQ SSON_3435 - 50S ribosomal protein L17 3196 52.22 0 3612840..3613829 - 329 74313814 rpoA SSON_3436 - DNA-directed RNA polymerase subunit alpha 3197 50.72 0 3613855..3614475 - 206 74313815 rpsD SSON_3437 - 30S ribosomal protein S4 3198 51.54 0 3614509..3614898 - 129 74313816 rpsK SSON_3438 - 30S ribosomal protein S11 3199 51.82 0 3614915..3615271 - 118 74313817 rpsM SSON_3439 - 30S ribosomal protein S13 3200 47.86 0 3615418..3615534 - 38 74313818 rpmJ SSON_3440 - 50S ribosomal protein L36 3201 49.32 0 3615566..3616897 - 443 74313819 secY SSON_3441 - preprotein translocase subunit SecY 3202 53.79 0 3616905..3617339 - 144 74313820 rplO SSON_3442 - 50S ribosomal protein L15 3203 50.00 0 3617343..3617522 - 59 74313821 rpmD SSON_3443 - 50S ribosomal protein L30 3204 50.00 0 3617526..3618029 - 167 74313822 rpsE SSON_3444 - 30S ribosomal protein S5 3205 53.39 0 3618044..3618397 - 117 74313823 rplR SSON_3445 - 50S ribosomal protein L18 3206 51.87 0 3618407..3618940 - 177 74313824 rplF SSON_3446 - 50S ribosomal protein L6 3207 50.13 0 3618953..3619345 - 130 74313825 rpsH SSON_3447 - 30S ribosomal protein S8 3208 52.94 0 3619379..3619684 - 101 74313826 rpsN SSON_3448 - 30S ribosomal protein S14 3209 49.63 0 3619699..3620238 - 179 74313827 rplE SSON_3449 - 50S ribosomal protein L5 3210 46.35 -1 3620253..3620567 - 104 74313828 rplX SSON_3450 - 50S ribosomal protein L24 3211 51.08 0 3620578..3620949 - 123 74313829 rplN SSON_3451 - 50S ribosomal protein L14 3212 47.45 -1 3621112..3621366 - 84 74313830 rpsQ SSON_3452 - 30S ribosomal protein S17 3213 54.17 0 3621366..3621557 - 63 74313831 rpmC SSON_3453 - 50S ribosomal protein L29 3214 51.82 0 3621557..3621967 - 136 74313832 rplP SSON_3454 - 50S ribosomal protein L16 3215 50.71 0 3621980..3622681 - 233 74313833 rpsC SSON_3455 - 30S ribosomal protein S3 3216 49.85 0 3622699..3623031 - 110 74313834 rplV SSON_3456 - 50S ribosomal protein L22 3217 49.46 0 3623046..3623324 - 92 74313835 rpsS SSON_3457 - 30S ribosomal subunit protein S19 3218 52.68 0 3623341..3624162 - 273 74313836 rplB SSON_3458 - 50S ribosomal protein L2 3219 48.18 0 3624180..3624482 - 100 74313837 rplW SSON_3459 - 50S ribosomal protein L23 3220 52.97 0 3624479..3625084 - 201 74313838 rplD SSON_3460 - 50S ribosomal protein L4 3221 51.59 0 3625095..3625724 - 209 74313839 rplC SSON_3461 - 50S ribosomal protein L3 3222 55.45 0 3625757..3626068 - 103 74313840 rpsJ SSON_3462 - 30S ribosomal protein S10 3223 45.71 -1 3626306..3626725 - 139 74313841 pinO SSON_3463 - chromosome replication protein PioO 3224 52.63 0 3627274..3628071 - 265 74313842 - SSON_3464 - IS21 ORF2 3225 53.03 0 3628071..3629243 - 390 74313843 - SSON_3465 - IS21 ORF1 3226 54.37 0 3630813..3631316 + 167 74313844 - SSON_3467 - IS1 ORF 3227 53.16 0 3632144..3633328 - 394 74313845 tufA SSON_3469 - elongation factor Tu 3228 50.87 0 3633399..3635513 - 704 74313846 fusA SSON_3470 - elongation factor G 3229 49.47 0 3635610..3636080 - 156 74313847 rpsG SSON_3471 - 30S ribosomal protein S7 3230 53.33 0 3636177..3636551 - 124 74313848 rpsL SSON_3472 - 30S ribosomal protein S12 3231 50.69 0 3636677..3636964 - 95 74313849 yheL SSON_3473 - tRNA 2-thiouridine synthesizing protein B 3232 50.00 0 3636972..3637331 - 119 74313850 yheM SSON_3474 - hypothetical protein 3233 55.81 0 3637331..3637717 - 128 74313851 yheN SSON_3475 - hypothetical protein 3234 46.67 -1 3637717..3638451 - 244 74313852 yheO SSON_3476 - hypothetical protein 3235 48.34 0 3638606..3639418 - 270 74313853 fkpA SSON_3477 - FKBP-type peptidyl-prolyl cis-trans isomerase 3236 52.97 0 3639639..3639857 + 72 74313854 slyX SSON_3478 - hypothetical protein 3237 54.99 0 3639906..3640496 - 196 74313855 slyD SSON_3479 - FKBP-type peptidyl-prolyl cis-trans isomerase 3238 48.26 0 3640591..3640791 - 66 74313856 - SSON_3480 - hypothetical protein 3239 54.82 0 3640801..3642606 - 601 74313857 kefB SSON_3481 - glutathione-regulated potassium-efflux system protein KefB 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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