IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3139	 50.87	0	3546607..3547929	+	440	74313757	yhcL	SSON_3368	-	putative cryptic C4-dicarboxylate transporter DcuD
3140	 55.02	0	3547972..3548469	-	165	74313758	sspB	SSON_3369	-	ClpXP protease specificity-enhancing factor
3141	 53.68	0	3548475..3549113	-	212	74313759	sspA	SSON_3370	-	stringent starvation protein A
3142	 52.16	0	3549508..3549900	-	130	74313760	rpsI	SSON_3371	-	30S ribosomal protein S9
3143	 50.12	0	3549916..3550344	-	142	74313761	rplM	SSON_3372	-	50S ribosomal protein L13
3144	 52.04	0	3550563..3551690	-	375	74313762	yhcM	SSON_3373	-	hypothetical protein
3145	 54.07	0	3551878..3552282	+	134	74313763	yhcB	SSON_3374	-	cytochrome d ubiquinol oxidase subunit III
3146	 52.19	0	3552436..3553803	+	455	74313764	degQ	SSON_3375	-	serine endoprotease
3147	 52.90	0	3553893..3554960	+	355	74313765	degS	SSON_3376	-	serine endoprotease
3148	 53.90	0	3555011..3556357	-	448	74313766	-	SSON_3377	-	IS4 orf
3149	 51.86	0	3556461..3557399	-	312	74313767	mdh	SSON_3378	-	malate dehydrogenase
3150	 48.83	0	3557834..3558304	+	156	74313768	argR	SSON_3379	-	arginine repressor
3151	 46.67	-1	3558618..3558932	+	104	74313769	yhcN	SSON_3380	-	hypothetical protein
3152	 42.49	-2	3558988..3559260	-	90	74313770	yhcO	SSON_3381	-	hypothetical protein
3153	 52.54	0	3559352..3561319	-	655	74313771	yhcP	SSON_3382	-	p-hydroxybenzoic acid efflux subunit AaeB
3154	 53.48	0	3561325..3562257	-	310