IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3129	 50.41	0	3529763..3532099	-	778	74313747	arcB	SSON_3358	-	aerobic respiration control sensor protein ArcB
3130	 56.13	+1	3532195..3533124	-	309	74313748	yhcC	SSON_3359	-	hypothetical protein
3131	 57.03	+1	3533706..3538259	+	1517	74313749	gltB	SSON_3360	-	glutamate synthase subunit alpha
3132	 55.74	0	3538272..3539690	+	472	74313750	gltD	SSON_3361	-	glutamate synthase subunit beta
3133	 48.60	0	3540751..3541215	-	154	74313751	yhcH	SSON_3362	-	hypothetical protein
3134	 57.88	+1	3541212..3542087	-	291	161986439	yhcI	SSON_3363	-	N-acetylmannosamine kinase
3135	 57.68	+1	3542084..3542773	-	229	74313753	yhcJ	SSON_3364	-	N-acetylmannosamine-6-phosphate 2-epimerase
3136	 55.06	0	3542821..3544311	-	496	161986438	nanT	SSON_3365	-	putative sialic acid transporter
3137	 52.01	0	3544421..3545314	-	297	74313755	nanA	SSON_3366	-	N-acetylneuraminate lyase
3138	 52.53	0	3545436..3546227	-	263	74313756	yhcK	SSON_3367	-	transcriptional regulator NanR
3139	 50.87	0	3546607..3547929	+	440	74313757	yhcL	SSON_3368	-	putative cryptic C4-dicarboxylate transporter DcuD
3140	 55.02	0	3547972..3548469	-	165	74313758	sspB	SSON_3369	-	ClpXP protease specificity-enhancing factor
3141	 53.68	0	3548475..3549113	-	212	74313759	sspA	SSON_3370	-	stringent starvation protein A
3142	 52.16	0	3549508..3549900	-	130	74313760	rpsI	SSON_3371	-	30S ribosomal protein S9
3143	 50.12	0	3549916..3550344	-	142	74313761	rplM	SSON_3372	-	50S ribosomal protein L13