IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3121	 52.79	0	3523791..3525224	+	477	74313739	rpoN	SSON_3350	-	RNA polymerase factor sigma-54
3122	 44.79	-1	3525247..3525534	+	95	74313740	yhbH	SSON_3351	-	putative sigma(54) modulation protein
3123	 52.03	0	3525652..3526143	+	163	74313741	ptsN	SSON_3352	-	sugar-specific enzyme IIA component of PTS
3124	 52.16	0	3526189..3527043	+	284	74313742	yhbJ	SSON_3353	-	hypothetical protein
3125	 50.18	0	3527040..3527312	+	90	74313743	ptsO	SSON_3354	-	phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr)
3126	 51.03	0	3527526..3528158	+	210	74313744	yrbL	SSON_3355	-	hypothetical protein
3127	 51.58	0	3528155..3528883	-	242	74313745	mtgA	SSON_3356	-	monofunctional biosynthetic peptidoglycan transglycosylase
3128	 52.64	0	3528880..3529542	-	220	74313746	yhbL	SSON_3357	-	isoprenoid biosynthesis protein
3129	 50.41	0	3529763..3532099	-	778	74313747	arcB	SSON_3358	-	aerobic respiration control sensor protein ArcB
3130	 56.13	+1	3532195..3533124	-	309	74313748	yhcC	SSON_3359	-	hypothetical protein
3131	 57.03	+1	3533706..3538259	+	1517	74313749	gltB	SSON_3360	-	glutamate synthase subunit alpha
3132	 55.74	0	3538272..3539690	+	472	74313750	gltD	SSON_3361	-	glutamate synthase subunit beta
3133	 48.60	0	3540751..3541215	-	154	74313751	yhcH	SSON_3362	-	hypothetical protein
3134	 57.88	+1	3541212..3542087	-	291	161986439	yhcI	SSON_3363	-	N-acetylmannosamine kinase
3135	 57.68	+1	3542084..3542773	-	229	7431375